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Col16a1
Gene Detail
Symbol

Name
ID
Col16a1
collagen, type XVI, alpha 1
MGI:1095396
Synonyms
2700007F12Rik, [a]1 (XVI) collagen, A530052M23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
63.43 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:130047840-130099283 bp, + strand
From VEGA annotation of GRCm38

  51444 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1397  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Col16a1

Human
homologs
Human Homolog COL16A1, collagen, type XVI, alpha 1
NCBI Gene ID 1307
neXtProt AC  NX_Q07092
Human Synonyms  447AA
Human Chr (Location)  1p35-p34; chr1:31652247-31704167 (-)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Col16a1 interacts with 229 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell adhesion, cellular response to amino acid stimulus
Component collagen trimer, extracellular region, ...
Function integrin binding
External Resources: FuncBase
Expression
Literature Summary: (8 records)
Data Summary: Results (70)    Tissues (43)    Images (49)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 70
cDNA source data(64)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(67) cDNA(66) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000009516 (Evidence)
Ensembl Gene ModelENSMUSG00000040690 (Evidence)
Entrez Gene107581 (Evidence)
UniGene41860
DFCITC1587133, TC1576517, TC1606947, TC1604184
DoTSDT.482517, DT.101173537, DT.91300228, DT.94183098, DT.101385747
NIA Mouse Gene IndexU004881
Consensus CDS ProjectCCDS38889.1
International Mouse Knockout Project StatusCol16a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009516 VEGA Gene Model | MGI Sequence Detail 51444 C57BL/6J ±  kb
transcript OTTMUST00000021751 VEGA | MGI Sequence Detail 5206 Not Applicable 
polypeptide OTTMUSP00000009921 VEGA | MGI Sequence Detail 1580 Not Applicable 

For the selected sequences
All sequences(117) RefSeq(42) UniProt(15)
Polymorphisms
SNPs within 2kb(526 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR013320 Concanavalin A-like lectin/glucanase, subgroup
InterPro IPR001791 Laminin G domain
Protein Ontology PR:000005700 collagen alpha-1(XVI) chain
References
(Earliest) J:34846 Lai CH, et al., Tissue distribution and developmental expression of type XVI collagen in the mouse. Tissue Cell. 1996 Apr;28(2):155-64
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)
Other
accession IDs
MGI:1919771, MGI:2140369, MGI:2447869

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory