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Col16a1
Gene Detail
Symbol

Name
ID
Col16a1
collagen, type XVI, alpha 1
MGI:1095396
Synonyms
2700007F12Rik, [a]1 (XVI) collagen, A530052M23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
63.43 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:130047840-130099283 bp, + strand
From VEGA annotation of GRCm38

  51444 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1397  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: COL16A1
Gene Tree: Col16a1

Human
homologs
COL16A1, collagen, type XVI, alpha 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 1307
neXtProt AC: NX_Q07092

Human Synonyms: 447AA, FP1572

Human Chr (Location): 1p35-p34; chr1:31652247-31704167 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Genomic Mutations involving Col16a1 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Col16a1 interacts with 228 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process cell adhesion, cell adhesion mediated by integrin, ...
Component collagen trimer, extracellular region, ...
Function integrin binding
External Resources: FuncBase
Expression
Literature Summary: (8 records)
Data Summary: Results (70)    Tissues (43)    Images (49)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 70
cDNA source data(64)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase col16a1 ; ZFIN col16a1    NEW 
Molecular
reagents
All nucleic(67) cDNA(66) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000009516 (Evidence)
Ensembl Gene Model ENSMUSG00000040690 (Evidence)
Entrez Gene 107581 (Evidence)
UniGene 41860
DFCI TC1576517, TC1606947, TC1604184, TC1587133
DoTS DT.101385747, DT.101173537, DT.482517, DT.94183098, DT.91300228
NIA Mouse Gene Index U004881
Consensus CDS Project CCDS38889.1
International Mouse Phenotyping Consortium Status Col16a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009516 VEGA Gene Model | MGI Sequence Detail 51444 C57BL/6J ±  kb
transcript OTTMUST00000021751 VEGA | MGI Sequence Detail 5206 Not Applicable 
polypeptide OTTMUSP00000009921 VEGA | MGI Sequence Detail 1580 Not Applicable 

For the selected sequences
All sequences(100) RefSeq(32) UniProt(8)
Polymorphisms
SNPs within 2kb(526 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR013320 Concanavalin A-like lectin/glucanase, subgroup
InterPro IPR001791 Laminin G domain
Protein Ontology PR:000005700 collagen alpha-1(XVI) chain
References
(Earliest) J:34846 Lai CH, et al., Tissue distribution and developmental expression of type XVI collagen in the mouse. Tissue Cell. 1996 Apr;28(2):155-64
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:1919771, MGI:2140369, MGI:2447869

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory