Ccpn-ps Pseudogene Detail

Summary

• Symbol
  Ccpn-ps
• Name
  calcyphosine, pseudogene
• Synonyms
  EG546692

• Feature Type
  pseudogene
• IDs
  MGI:109504
  NCBI Gene: 12456
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:57019051-57019630 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 29.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  5 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109504	pseudogene	Chr17:57018695-57019652 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Ccpn-ps
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000121599 (Evidence)
• NCBI Gene
  12456

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121599	Ensembl Gene Model | MGI Sequence Detail	580	C57BL/6J
transcript	ENSMUST00000249632	Ensembl | MGI Sequence Detail	360	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-39503, MGI:3645389

References

• Summaries
  All 5
• Earliest
  J:38980 Clement S, et al., Loss of calcyphosine gene expression in mouse and other rodents. Biochem Biophys Res Commun. 1997 Mar 17;232(2):407-13