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Cdh12 Gene Detail
Summary
  • Symbol
    Cdh12
  • Name
    cadherin 12
  • Synonyms
    Br-cadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:109503
    NCBI Gene: 215654
  • Gene Overview
    MyGene.info: CDH12
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:20449265-21589533 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 8.25 cM
Strain
Comparison
more
  • SNPs within 2kb
    8227 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109503
protein coding gene Chr15:20448879-21598421 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021745
protein coding gene Chr15:18857900-19349510 (+)
A/J MGP_AJ_G0021705
protein coding gene Chr15:18145968-18617991 (+)
AKR/J MGP_AKRJ_G0021683
protein coding gene Chr15:18591958-19077381 (+)
BALB/cJ MGP_BALBcJ_G0021712
protein coding gene Chr15:18175148-18664201 (+)
C3H/HeJ MGP_C3HHeJ_G0021488
protein coding gene Chr15:18572765-19079170 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022151
protein coding gene Chr15:19645198-20167006 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019691
protein coding gene Chr15:16919095-17379911 (+)
CAST/EiJ MGP_CASTEiJ_G0021004
protein coding gene Chr15:18925310-19423168 (+)
CBA/J MGP_CBAJ_G0021457
protein coding gene Chr15:20290595-20841369 (+)
DBA/2J MGP_DBA2J_G0021581
protein coding gene Chr15:17979209-18455038 (+)
FVB/NJ MGP_FVBNJ_G0021559
protein coding gene Chr15:17616636-18070673 (+)
LP/J MGP_LPJ_G0021649
protein coding gene Chr15:18765879-19264471 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021584
protein coding gene Chr15:22236456-22801233 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022174
protein coding gene Chr15:18742484-19238332 (+)
PWK/PhJ MGP_PWKPhJ_G0020747
protein coding gene Chr15:18169998-18640234 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020585
protein coding gene Chr15:18554170-19048194 (+)
WSB/EiJ MGP_WSBEiJ_G0021060
protein coding gene Chr15:18750927-19265499 (+)



Homology
more
  • Human Ortholog
    CDH12, cadherin 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDH12, cadherin 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDHB
  • Links
    NCBI Gene ID: 1010
    neXtProt AC: NX_P55289
    UniProt: P55289

  • Chr Location
    5p14.3; chr5:21750191-22853622 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040452 Ensembl Gene Model | MGI Sequence Detail 1140269 C57BL/6J ±  kb
transcript ENSMUST00000227496 Ensembl | MGI Sequence Detail 6004 Not Applicable  
polypeptide ENSMUSP00000153750 Ensembl | MGI Sequence Detail 794 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 7
    Primer pair 3
    Other 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-39502
References
more
  • Summaries
    All 33
    Developmental Gene Expression 9
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:245526 Bibollet-Bahena O, et al., A dual-strategy expression screen for candidate connectivity labels in the developing thalamus. PLoS One. 2017;12(5):e0177977

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory