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Snrpc Gene Detail
Summary
  • Symbol
    Snrpc
  • Name
    U1 small nuclear ribonucleoprotein C
  • Synonyms
    Snrp1c, U1-C
  • Feature Type
    protein coding gene
  • IDs
    MGI:109489
    NCBI Gene: 20630
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:27840087-27851968 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 14.59 cM, cytoband B1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    172 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109489
protein coding gene Chr17:27839974-27851968 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023428
protein coding gene Chr17:27176535-27191131 (+)
A/J MGP_AJ_G0023386
protein coding gene Chr17:26305631-26317784 (+)
AKR/J MGP_AKRJ_G0023351
protein coding gene Chr17:26483720-26497146 (+)
BALB/cJ MGP_BALBcJ_G0023391
protein coding gene Chr17:26579769-26591602 (+)
C3H/HeJ MGP_C3HHeJ_G0023152
protein coding gene Chr17:26859135-26873964 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023833
protein coding gene Chr17:28302844-28318373 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021308
protein coding gene Chr17:23690507-23701287 (+)
CAST/EiJ MGP_CASTEiJ_G0022653
protein coding gene Chr17:26830152-26851150 (+)
CBA/J MGP_CBAJ_G0023126
protein coding gene Chr17:29289744-29308043 (+)
DBA/2J MGP_DBA2J_G0023257
protein coding gene Chr17:25868871-25881058 (+)
FVB/NJ MGP_FVBNJ_G0023227
protein coding gene Chr17:25661396-25674654 (+)
LP/J MGP_LPJ_G0023335
protein coding gene Chr17:27443288-27456912 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023245
protein coding gene Chr17:28760962-28775409 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023875
protein coding gene Chr17:26900493-26914145 (+)
PWK/PhJ MGP_PWKPhJ_G0022403
protein coding gene Chr17:24665330-24677784 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022221
protein coding gene Chr17:24909491-24923518 (+)
WSB/EiJ MGP_WSBEiJ_G0022715
protein coding gene Chr17:26884064-26899095 (+)



Homology
more
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
    Orthology source: HGNC
  • Synonyms
    U1C, Yhc1
  • Links
    NCBI Gene ID: 6631
    neXtProt AC: NX_P09234
    UniProt: P09234

  • Chr Location
    6p21.31; chr6:34757094-34773857 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20630 NCBI Gene Model | MGI Sequence Detail 11882 C57BL/6J ±  kb
transcript NM_011432 RefSeq | MGI Sequence Detail 775 C57BL/6  
polypeptide Q62241 UniProt | EBI | MGI Sequence Detail 159 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-39488
References
more
  • Summaries
    All 31
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:37896 Nelissen RL, et al., Cloning and characterization of two processed pseudogenes and the cDNA for the murine U1 snRNP-specific protein C. Gene. 1997 Jan 15;184(2):273-8
  • Latest
    J:219795 Sun S, et al., ALS-causative mutations in FUS/TLS confer gain and loss of function by altered association with SMN and U1-snRNP. Nat Commun. 2015;6:6171

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory