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Snrpc
Gene Detail
Symbol

Name
ID
Snrpc
U1 small nuclear ribonucleoprotein C
MGI:109489
Synonyms
Snrp1c, U1-C
Feature Type
protein coding gene
Genetic Map
Chromosome 17
14.59 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:27839974-27851968 bp, + strand
From VEGA annotation of GRCm38

  11995 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134217  Vertebrate Homology Class
1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: U1 small nuclear ribonucleoprotein C
Gene Tree: Snrpc

Mutations,
alleles, and
phenotypes
All mutations/alleles(29) : Gene trapped(27) Targeted(2)
Interactions
Snrpc interacts with 37 markers (Mir17, Mir20b, Mir23a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process mRNA splicing, via spliceosome, spliceosomal snRNP assembly
Component nucleus, ribonucleoprotein complex, ...
Function metal ion binding, nucleic acid binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(9)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000023175 (Evidence)
Ensembl Gene ModelENSMUSG00000024217 (Evidence)
Entrez Gene20630 (Evidence)
DFCITC1574656
NIA Mouse Gene IndexU043578, U104910, U357580, U162785, U108431
Consensus CDS ProjectCCDS28570.1
International Mouse Knockout Project StatusSnrpc
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023175 VEGA Gene Model | MGI Sequence Detail 11995 C57BL/6J ±  kb
transcript OTTMUST00000056061 VEGA | MGI Sequence Detail 870 Not Applicable 
polypeptide OTTMUSP00000026897 VEGA | MGI Sequence Detail 159 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(173 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017340 U1 small nuclear ribonucleoprotein C
InterPro IPR000690 Zinc finger, C2H2-type matrin
InterPro IPR013085 Zinc finger, U1-C type
InterPro IPR003604 Zinc finger, U1-type
Protein Ontology PR:000015342 U1 small nuclear ribonucleoprotein C
References
(Earliest) J:37896 Nelissen RL, et al., Cloning and characterization of two processed pseudogenes and the cDNA for the murine U1 snRNP-specific protein C. Gene. 1997 Jan 15;184(2):273-8
(Latest) J:183666 Huang SC, et al., RBFOX2 promotes protein 4.1R exon 16 selection via U1 snRNP recruitment. Mol Cell Biol. 2012 Jan;32(2):513-26
All references(29)
Other
accession IDs
MGD-MRK-39488

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory