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Snrpc Gene Detail
Summary
  • Symbol
    Snrpc
  • Name
    U1 small nuclear ribonucleoprotein C
  • Synonyms
    Snrp1c, U1-C
  • Feature Type
    protein coding gene
  • IDs
    MGI:109489
    NCBI Gene: 20630
Location & Maps
more
  • Sequence Map
    Chr17:27839974-27851968 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11995 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 14.59 cM, cytoband B1
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
    Orthology source: HGNC
  • Synonyms
    U1C, Yhc1
  • Links
    NCBI Gene ID: 6631
    neXtProt AC: NX_P09234

  • Chr Location
    6p21.31; chr6:34757094-34773857 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    29
  • Gene trapped
    27
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023175 VEGA Gene Model | MGI Sequence Detail 11995 C57BL/6J ±  kb
transcript OTTMUST00000056061 VEGA | MGI Sequence Detail 870 Not Applicable  
polypeptide OTTMUSP00000026897 VEGA | MGI Sequence Detail 159 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    172 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015342 U1 small nuclear ribonucleoprotein C
  • InterPro Domains
    IPR017340 U1 small nuclear ribonucleoprotein C
    IPR000690 Zinc finger, C2H2-type matrin
    IPR013085 Zinc finger, U1-C type
    IPR003604 Zinc finger, U1-type
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-39488
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:37896 Nelissen RL, et al., Cloning and characterization of two processed pseudogenes and the cDNA for the murine U1 snRNP-specific protein C. Gene. 1997 Jan 15;184(2):273-8
  • Latest
    J:219795 Sun S, et al., ALS-causative mutations in FUS/TLS confer gain and loss of function by altered association with SMN and U1-snRNP. Nat Commun. 2015;6:6171

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/13/2016
MGI 6.05
The Jackson Laboratory