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Ly6f
Gene Detail
Symbol

Name
ID
Member of
Ly6f
lymphocyte antigen 6 complex, locus F
MGI:109441
Ly6 cluster
Feature Type
protein coding gene
Genetic Map
Chromosome 15
34.29 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr15:75268702-75272235 bp, + strand
From VEGA annotation of GRCm38

  3534 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:113718  Vertebrate Homology Class
7 mouse; 6 rat

Protein SuperFamily: Ly-6-like protein
Gene Tree: Ly6f

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Radiation induced(1) Targeted(3)
Genomic Mutations involving Ly6f (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ly6f interacts with 74 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component anchored component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(2) Genomic(1) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000045190 (Evidence)
Ensembl Gene ModelENSMUSG00000022583 (Evidence)
Entrez Gene17071 (Evidence)
DFCITC1594232
DoTSDT.91429792
NIA Mouse Gene IndexU016346
Consensus CDS ProjectCCDS27543.1
International Mouse Knockout Project StatusLy6f
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045190 VEGA Gene Model | MGI Sequence Detail 3534 C57BL/6J ±  kb
transcript OTTMUST00000118737 VEGA | MGI Sequence Detail 818 Not Applicable 
polypeptide OTTMUSP00000066255 VEGA | MGI Sequence Detail 134 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(60 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001526 CD59 antigen
InterPro IPR018363 CD59 antigen, conserved site
InterPro IPR016054 Ly-6 antigen / uPA receptor -like
Protein Ontology PR:000010027 lymphocyte antigen 6F
References
(Earliest) J:12607 Fleming TJ, et al., Characterization of two novel Ly-6 genes. Protein sequence and potential structural similarity to alpha-bungarotoxin and other neurotoxins. J Immunol. 1993 Jun 15;150(12):5379-90
All references(19)
Other
accession IDs
MGD-MRK-38486

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory