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Ly6f Gene Detail
Summary
  • Symbol
    Ly6f
  • Name
    lymphocyte antigen 6 complex, locus F
  • Feature Type
    protein coding gene
  • IDs
    MGI:109441
    NCBI Gene: 17071
  • Member of
    Ly6 cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:75268421-75272235 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 34.29 cM, cytoband E1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109441
protein coding gene Chr15:75268372-75272237 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021948
protein coding gene Chr15:75047536-75049969 (+)
A/J MGP_AJ_G0021909
protein coding gene Chr15:72512698-72516549 (+)
AKR/J MGP_AKRJ_G0021893
protein coding gene Chr15:74413537-74417269 (+)
BALB/cJ MGP_BALBcJ_G0021918
protein coding gene Chr15:72472426-72476164 (+)
C3H/HeJ MGP_C3HHeJ_G0021689
protein coding gene Chr15:74508686-74512686 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022358
protein coding gene Chr15:78047234-78050942 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0021205
protein coding gene Chr15:75130092-75132519 (+)
CBA/J MGP_CBAJ_G0021657
protein coding gene Chr15:80543298-80547039 (+)
DBA/2J MGP_DBA2J_G0021782
protein coding gene Chr15:72069011-72072803 (+)
FVB/NJ MGP_FVBNJ_G0021763
protein coding gene Chr15:71081402-71085155 (+)
LP/J MGP_LPJ_G0021849
protein coding gene Chr15:75150747-75153180 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021787
protein coding gene Chr15:85839025-85842954 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022379
protein coding gene Chr15:74698212-74702023 (+)
PWK/PhJ MGP_PWKPhJ_G0020946
protein coding gene Chr15:71957662-71960096 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020785
protein coding gene Chr15:74324337-74326780 (+)
WSB/EiJ MGP_WSBEiJ_G0021258
protein coding gene Chr15:74634519-74636946 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022583 Ensembl Gene Model | MGI Sequence Detail 3815 C57BL/6J ±  kb
transcript ENSMUST00000189654 Ensembl | MGI Sequence Detail 818 Not Applicable  
polypeptide ENSMUSP00000140899 Ensembl | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-38486
References
more
  • Summaries
    All 37
    Diseases 1
    Gene Ontology 2
    Phenotypes 24
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/14/2020
MGI 6.14
The Jackson Laboratory