Polr1d
Gene Detail

Symbol Name ID

Polr1d polymerase (RNA) I polypeptide D MGI:108403

Synonyms

1110003G10Rik, 16kDa, mRPA16, Rpo1-3

Feature Type

protein coding gene

Genetic Map

Chromosome 5

86.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr5:147077050-147111361 bp, + strand From VEGA annotation of GRCm38   34312 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:22239  Vertebrate Homology Class
1 human; 1 mouse; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: DNA-directed RNA polymerase subunits
Gene Tree: Polr1d

Human homologs

Human Homolog		POLR1D, polymerase (RNA) I polypeptide D, 16kDa
NCBI Gene ID		51082
neXtProt AC		NX_Q9Y2S0
Human Synonyms		AC19, POLR1C, RPA16, RPA9, RPAC2, RPC16, RPO1-3, TCS2
Human Chr (Location)		13q12.2; chr13:28194880-28241559 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human POLR1D

Alleles and phenotypes

All alleles(14) : Gene trapped(14)

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Process	transcription, DNA-dependent
Component	DNA-directed RNA polymerase I complex, nucleus
Function	DNA binding, DNA-directed RNA polymerase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (182)    Tissues (110)    Images (27)
Theiler Stages: 15, 17, 19, 22, 23

Assay Type	Results
RNA in situ	182

cDNA source data(19)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(19) cDNA(19)
Microarray probesets(8)

Other database links

VEGA Gene Model	OTTMUSG00000024630 (Evidence)
Ensembl Gene Model	ENSMUSG00000029642 (Evidence)
Entrez Gene	20018 (Evidence)
DFCI	TC1572758, TC1576016, TC1685171
DoTS	DT.101367411, DT.110653604, DT.496057, DT.94348584, DT.94348587, DT.99863701
NIA Mouse Gene Index	U006442, U071886
Consensus CDS Project	CCDS19876.1, CCDS39397.1
International Mouse Knockout Project Status	Polr1d

Sequences

Length	Strain/Species
genomic	OTTMUSG00000024630	VEGA Gene Model | MGI Sequence Detail	34312	C57BL/6J
transcript	OTTMUST00000060550	VEGA | MGI Sequence Detail	1196	Not Applicable
polypeptide	OTTMUSP00000029533	VEGA | MGI Sequence Detail	133	Not Applicable

All sequences(48) RefSeq(4) UniProt(5)

Polymorphisms

SNPs(151 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR009025	DNA-directed RNA polymerase, RBP11-like
InterPro	IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Protein Ontology	PR:000012985	DNA-directed RNA polymerases I and III subunit RPAC2

References

(Earliest) J:37296 Yao Y, et al., Mouse RNA polymerase I 16-kDa subunit able to associate with 40-kDa subunit is a homolog of yeast AC19 subunit of RNA polymerases I and III. J Biol Chem. 1996 Dec 20;271(51):32881-5
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)

Other accession IDs

MGD-MRK-37446, MGI:2141038, MGI:2141323, MGI:2447827