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Polr1d
Gene Detail
Symbol

Name
ID
Polr1d
polymerase (RNA) I polypeptide D
MGI:108403
Synonyms
1110003G10Rik, 16kDa, mRPA16, Rpo1-3
Feature Type
protein coding gene
Genetic Map
Chromosome 5
86.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:147077050-147111597 bp, + strand
From VEGA annotation of GRCm38

  34548 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22239  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: POLR1D
Protein SuperFamily: DNA-directed RNA polymerase subunits
Gene Tree: Polr1d

Human
homologs
POLR1D, polymerase (RNA) I polypeptide D, 16kDa
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 51082
neXtProt AC: NX_Q9Y2S0

Human Synonyms: AC19, POLR1C, RPA16, RPA9, RPAC2, RPC16, RPO1-3, TCS2

Human Chr (Location): 13q12.2; chr13:27620743-27667422 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human POLR1D

Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(14)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Polr1d interacts with 68 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (182)    Tissues (110)    Images (27)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 182
cDNA source data(19)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100495369, polr1d.1 ; ZFIN polr1d    NEW 
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(8)
Other database
links
VEGA Gene Model OTTMUSG00000024630 (Evidence)
Ensembl Gene Model ENSMUSG00000029642 (Evidence)
Entrez Gene 20018 (Evidence)
DFCI TC1572758, TC1576016, TC1685171
DoTS DT.101367411, DT.110653604, DT.496057, DT.94348584, DT.94348587, DT.99863701
NIA Mouse Gene Index U006442, U071886
Consensus CDS Project CCDS19876.1, CCDS39397.1
International Mouse Phenotyping Consortium Status Polr1d
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024630 VEGA Gene Model | MGI Sequence Detail 34548 C57BL/6J ±  kb
transcript OTTMUST00000060550 VEGA | MGI Sequence Detail 1196 Not Applicable 
polypeptide OTTMUSP00000029533 VEGA | MGI Sequence Detail 133 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(4) UniProt(5)
Polymorphisms
SNPs within 2kb(386 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain
InterPro IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Protein Ontology PR:000012985 DNA-directed RNA polymerases I and III subunit RPAC2
References
(Earliest) J:37296 Yao Y, et al., Mouse RNA polymerase I 16-kDa subunit able to associate with 40-kDa subunit is a homolog of yeast AC19 subunit of RNA polymerases I and III. J Biol Chem. 1996 Dec 20;271(51):32881-5
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGD-MRK-37446, MGI:2141038, MGI:2141323, MGI:2447827

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory