About   Help   FAQ
Polr1d
Gene Detail
 Symbol
Name
ID
Polr1d
polymerase (RNA) I polypeptide D
MGI:108403
Synonyms 1110003G10Rik, 16kDa, mRPA16, Rpo1-3
Feature Type protein coding gene
Genetic Map
Chromosome 5
86.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:147077050-147111361 bp, + strand
From VEGA annotation of GRCm38

  34312 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22239  Vertebrate Homology Class
1 human; 1 mouse; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: DNA-directed RNA polymerase subunits
Gene Tree: Polr1d

Human
homologs
Human Homolog POLR1D, polymerase (RNA) I polypeptide D, 16kDa
NCBI Gene ID 51082
neXtProt AC  NX_Q9Y2S0
Human Synonyms  AC19, POLR1C, RPA16, RPA9, RPAC2, RPC16, RPO1-3, TCS2
Human Chr (Location)  13q12.2; chr13:27620743-27667422 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human POLR1D
Alleles
and
phenotypes
All alleles(14) : Gene trapped(14)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process transcription, DNA-templated
Component DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex, ...
Function DNA binding, DNA-directed RNA polymerase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (182)    Tissues (110)    Images (27)
Theiler Stages: 15, 17, 19, 22, 23
Assay TypeResults
RNA in situ 182
cDNA source data(19)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(8)
Other database
links
VEGA Gene ModelOTTMUSG00000024630 (Evidence)
Ensembl Gene ModelENSMUSG00000029642 (Evidence)
Entrez Gene20018 (Evidence)
DFCITC1572758, TC1576016, TC1685171
DoTSDT.101367411, DT.110653604, DT.496057, DT.94348584, DT.94348587, DT.99863701
NIA Mouse Gene IndexU006442, U071886
Consensus CDS ProjectCCDS19876.1, CCDS39397.1
International Mouse Knockout Project StatusPolr1d
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024630 VEGA Gene Model | MGI Sequence Detail 34312 C57BL/6J ±  kb
transcript OTTMUST00000060550 VEGA | MGI Sequence Detail 1196 Not Applicable 
polypeptide OTTMUSP00000029533 VEGA | MGI Sequence Detail 133 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(4) UniProt(5)
Polymorphisms SNPs within 2kb(385 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009025 DNA-directed RNA polymerase, RBP11-like
InterPro IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Protein Ontology PR:000012985 DNA-directed RNA polymerases I and III subunit RPAC2
References (Earliest) J:37296 Yao Y, et al., Mouse RNA polymerase I 16-kDa subunit able to associate with 40-kDa subunit is a homolog of yeast AC19 subunit of RNA polymerases I and III. J Biol Chem. 1996 Dec 20;271(51):32881-5
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)
Other
accession IDs
MGD-MRK-37446, MGI:2141038, MGI:2141323, MGI:2447827

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory