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Polr1d Gene Detail
Summary
  • Symbol
    Polr1d
  • Name
    polymerase (RNA) I polypeptide D
  • Synonyms
    1110003G10Rik, 16kDa, mRPA16, Rpo1-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:108403
    NCBI Gene: 20018
  • Gene Overview
    MyGene.info: POLR1D
Location & Maps
more
  • Sequence Map
    Chr5:147077050-147111597 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      34548 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 86.73 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    POLR1D, RNA polymerase I subunit D
  • Vertebrate Orthologs
    9
  • Human Ortholog
    POLR1D, RNA polymerase I subunit D
    Orthology source: HGNC, HomoloGene
  • Synonyms
    AC19, POLR1C, RPA16, RPA9, RPAC2, RPC16, RPO1-3, TCS2
  • Links
    NCBI Gene ID: 51082
    neXtProt AC: NX_Q9Y2S0

  • Chr Location
    13q12.2; chr13:27620743-27667422 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human POLR1D associations

Human Disease Mouse Models
       Treacher Collins Syndrome 2; TCS2   OMIM: 613717
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024630 VEGA Gene Model | MGI Sequence Detail 34548 C57BL/6J ±  kb
transcript OTTMUST00000060550 VEGA | MGI Sequence Detail 1196 Not Applicable  
polypeptide OTTMUSP00000029533 VEGA | MGI Sequence Detail 133 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    384 from dbSNP Build 142
Protein
Information
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  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000012985 DNA-directed RNA polymerases I and III subunit RPAC2
  • InterPro Domains
    IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain
    IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Molecular
Reagents
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  • All nucleic 19
    cDNA 19

    Microarray probesets 8
Other
Accession IDs
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MGD-MRK-37446, MGI:2141038, MGI:2141323, MGI:2447827
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:37296 Yao Y, et al., Mouse RNA polymerase I 16-kDa subunit able to associate with 40-kDa subunit is a homolog of yeast AC19 subunit of RNA polymerases I and III. J Biol Chem. 1996 Dec 20;271(51):32881-5
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory