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Slc20a1 Gene Detail
Summary
  • Symbol
    Slc20a1
  • Name
    solute carrier family 20, member 1
  • Synonyms
    Glvr1, Glvr-1, PiT-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:108392
    NCBI Gene: 20515
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:129040684-129053536 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 2, 62.79 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_108392
protein coding gene Chr2:129038662-129053536 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026485
protein coding gene Chr2:132578005-132590810 (+)
A/J MGP_AJ_G0026449
protein coding gene Chr2:127205219-127217971 (+)
AKR/J MGP_AKRJ_G0026424
protein coding gene Chr2:130818474-130831222 (+)
BALB/cJ MGP_BALBcJ_G0026461
protein coding gene Chr2:127471200-127484495 (+)
C3H/HeJ MGP_C3HHeJ_G0026204
protein coding gene Chr2:131333470-131346355 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026906
protein coding gene Chr2:136727699-136741477 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024283
protein coding gene Chr2:122028355-122041844 (+)
CAST/EiJ MGP_CASTEiJ_G0025665
protein coding gene Chr2:131584464-131597471 (+)
CBA/J MGP_CBAJ_G0026184
protein coding gene Chr2:141786177-141800834 (+)
DBA/2J MGP_DBA2J_G0026318
protein coding gene Chr2:126593993-126607046 (+)
FVB/NJ MGP_FVBNJ_G0026282
protein coding gene Chr2:125243759-125256727 (+)
LP/J MGP_LPJ_G0026423
protein coding gene Chr2:132819247-132834152 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026302
protein coding gene Chr2:145684421-145698284 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026961
protein coding gene Chr2:130853624-130866589 (+)
PWK/PhJ MGP_PWKPhJ_G0025401
protein coding gene Chr2:126179152-126192807 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025203
protein coding gene Chr2:129973259-129989078 (+)
WSB/EiJ MGP_WSBEiJ_G0025739
protein coding gene Chr2:131775668-131789466 (+)



Homology
more
  • Human Ortholog
    SLC20A1, solute carrier family 20 member 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC20A1, solute carrier family 20 member 1
  • Synonyms
    Glvr-1, GLVR1, PiT-1, PIT1
  • Links
    NCBI Gene ID: 6574
    neXtProt AC: NX_Q8WUM9
    UniProt: Q8WUM9

  • Chr Location
    2q14.1; chr2:112645939-112663825 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    43 phenotypes from 5 alleles in 6 genetic backgrounds
    9 images
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit mid-gestation lethality associated with abnormal vitelline vasculature, growth retardation, and anemia.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027397 Ensembl Gene Model | MGI Sequence Detail 12853 C57BL/6J ±  kb
    transcript ENSMUST00000028880 Ensembl | MGI Sequence Detail 3316 Not Applicable  
    polypeptide ENSMUSP00000028880 Ensembl | MGI Sequence Detail 681 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 28
      Genomic 2
      cDNA 19
      Primer pair 6
      Other 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-10163, MGD-MRK-10164, MGD-MRK-37434, MGI:2139020
    References
    more
    • Summaries
      All 68
      Developmental Gene Expression 9
      Gene Ontology 7
      Phenotypes 22
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:344457 Ramos-Brossier M, et al., Slc20a1 and Slc20a2 regulate neuronal plasticity and cognition independently of their phosphate transport ability. Cell Death Dis. 2024 Jan 9;15(1):20

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/12/2024
    MGI 6.23
    The Jackson Laboratory