Sdf4
Gene Detail

Symbol Name ID

Sdf4 stromal cell derived factor 4 MGI:108079

Synonyms

Cab45

Feature Type

protein coding gene

Genetic Map

Chromosome 4

87.66 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr4:155992872-156013610 bp, + strand From VEGA annotation of GRCm38   20739 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:32121  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Sdf4

Human homologs

Human Homolog		SDF4, stromal cell derived factor 4
NCBI Gene ID		51150
neXtProt AC		NX_Q9BRK5
Human Synonyms		Cab45, SDF-4
Human Chr (Location)		1p36.33; chr1:1152288-1167447 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(36) : Gene trapped(36)

Gene Ontology (GO) classifications

All GO classifications: (16 annotations)

Process	calcium ion-dependent exocytosis, cerebellum development, ...
Component	cytoplasm, Golgi apparatus, ...
Function	calcium ion binding, identical protein binding, ...

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (46)    Tissues (45)    Images (1)
Theiler Stages: 23, 28

Assay Type	Results
RT-PCR	46

cDNA source data(262)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(263) cDNA(262) Primer pair(1)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000010986 (Evidence)
Ensembl Gene Model	ENSMUSG00000029076 (Evidence)
Entrez Gene	20318 (Evidence)
UniGene	293517
DFCI	TC1573498, TC1586372, TC1603336, TC1608618
DoTS	DT.101183562, DT.495308, DT.94292660, DT.97413176
NIA Mouse Gene Index	U005227
Consensus CDS Project	CCDS19054.1
International Mouse Knockout Project Status	Sdf4

Sequences

Length	Strain/Species
genomic	OTTMUSG00000010986	VEGA Gene Model | MGI Sequence Detail	20739	C57BL/6J
transcript	OTTMUST00000025769	VEGA | MGI Sequence Detail	1670	Not Applicable
polypeptide	OTTMUSP00000011821	VEGA | MGI Sequence Detail	361	Not Applicable

All sequences(55) RefSeq(2) UniProt(1)

Polymorphisms

SNPs(74 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR002048	Calcium-binding EF-hand
InterPro	IPR018247	EF-Hand 1, calcium-binding site
InterPro	IPR018249	EF-HAND 2
InterPro	IPR011992	EF-hand-like domain
Protein Ontology	PR:000014562	45 kDa calcium-binding protein

References

(Earliest) J:32511 Scherer PE, et al., Cab45, a novel (Ca2+)-binding protein localized to the Golgi lumen. J Cell Biol. 1996 Apr;133(2):257-68
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)

Other accession IDs

MGD-MRK-35048, MGD-MRK-37116, MGI:106592