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Sdf2 Gene Detail
Summary
  • Symbol
    Sdf2
  • Name
    stromal cell derived factor 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:108019
    NCBI Gene: 20316
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:78245746-78255496 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 46.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_108019
protein coding gene Chr11:78245746-78255496 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018771
protein coding gene Chr11:79231566-79244181 (+)
A/J MGP_AJ_G0018737
protein coding gene Chr11:76207494-76218259 (+)
AKR/J MGP_AKRJ_G0018707
protein coding gene Chr11:78512051-78521839 (+)
BALB/cJ MGP_BALBcJ_G0018711
protein coding gene Chr11:76613768-76623519 (+)
C3H/HeJ MGP_C3HHeJ_G0018524
protein coding gene Chr11:78552242-78561994 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019162
protein coding gene Chr11:81705958-81718138 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016797
protein coding gene Chr11:73180188-73189822 (+)
CAST/EiJ MGP_CASTEiJ_G0018078
protein coding gene Chr11:78993934-79005970 (+)
CBA/J MGP_CBAJ_G0018494
protein coding gene Chr11:85275668-85286460 (+)
DBA/2J MGP_DBA2J_G0018603
protein coding gene Chr11:75786794-75796794 (+)
FVB/NJ MGP_FVBNJ_G0018593
protein coding gene Chr11:75375015-75384794 (+)
LP/J MGP_LPJ_G0018674
protein coding gene Chr11:79772116-79782772 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018619
protein coding gene Chr11:85685896-85698666 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019202
protein coding gene Chr11:78754815-78764553 (+)
PWK/PhJ MGP_PWKPhJ_G0017849
protein coding gene Chr11:76572578-76584320 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017640
protein coding gene Chr11:78365617-78377140 (+)
WSB/EiJ MGP_WSBEiJ_G0018131
protein coding gene Chr11:78568924-78579502 (+)



Homology
more
  • Human Ortholog
    SDF2, stromal cell derived factor 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SDF2, stromal cell derived factor 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 6388
    neXtProt AC: NX_Q99470
    UniProt: Q99470

  • Chr Location
    17q11.2; chr17:28648356-28662189 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 5045
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: SDF2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20316 NCBI Gene Model | MGI Sequence Detail 9751 C57BL/6J ±  kb
transcript NM_009143 RefSeq | MGI Sequence Detail 1284 C57BL/6  
polypeptide Q9DCT5 UniProt | EBI | MGI Sequence Detail 211 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-37055, MGI:2144317
References
more
  • Summaries
    All 35
    Gene Ontology 4
    Phenotypes 14
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory