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Sdf2 Gene Detail
Summary
  • Symbol
    Sdf2
  • Name
    stromal cell derived factor 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:108019
    NCBI Gene: 20316
Location & Maps
more
  • Sequence Map
    Chr11:78245746-78255496 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      9751 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 46.74 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SDF2, stromal cell derived factor 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SDF2, stromal cell derived factor 2
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 6388
    neXtProt AC: NX_Q99470

  • Chr Location
    17q11.2; chr17:28648356-28662189 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 5045
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: SDF2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    14 phenotype references
  • All Mutations and Alleles
    64
  • Chemically induced (other)
    1
  • Gene trapped
    60
  • Targeted
    3
  • Genomic Mutations
    2 involving Sdf2
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000094 VEGA Gene Model | MGI Sequence Detail 9751 C57BL/6J ±  kb
transcript OTTMUST00000000307 VEGA | MGI Sequence Detail 1268 Not Applicable  
polypeptide OTTMUSP00000000139 VEGA | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    35 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR027005 Glycosyltransferase 39-like
    IPR016093 MIR motif
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-37055, MGI:2144317
References
more
  • Summaries
    All 26
    Gene Ontology 3
    Phenotypes 14
  • Earliest
    J:36466 Hamada T, et al., Isolation and characterization of a novel secretory protein, stromal cell-derived factor-2 (SDF-2) using the signal sequence trap method. Gene. 1996 Oct 17;176(1-2):211-4
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory