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Kcnj9
Gene Detail
Symbol

Name
ID
Kcnj9
potassium inwardly-rectifying channel, subfamily J, member 9
MGI:108007
Synonyms
1700085N21Rik, Girk3, Kir3.3
Feature Type
protein coding gene
Genetic Map
Chromosome 1
79.66 cM
Detailed Genetic Map ± 1 cM


Mapping data(12)
Sequence Map
Chr1:172320501-172329318 bp, - strand
From VEGA annotation of GRCm38

  8818 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37989  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

HCOP human homology predictions: KCNJ9
Protein SuperFamily: G protein-activated inward rectifier potassium channel
Gene Tree: Kcnj9

Human
homologs
KCNJ9, potassium channel, inwardly rectifying subfamily J, member 9
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 3765
neXtProt AC: NX_Q92806

Human Synonyms: GIRK3, KIR3.3

Human Chr (Location): 1q23.2; chr1:160079953-160090563 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Inactivation of this locus does not result in any overt phenotype.
 
Interactions
Kcnj9 interacts with 147 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (7 records)
Data Summary: Results (91)    Tissues (77)    Images (9)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 35
RT-PCR 56
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase kcnj9    NEW 
Molecular
reagents
All nucleic(39) Genomic(23) cDNA(11) Primer pair(5)
Microarray probesets(9)
Other database
links
VEGA Gene Model OTTMUSG00000050096 (Evidence)
Ensembl Gene Model ENSMUSG00000038026 (Evidence)
Entrez Gene 16524 (Evidence)
DFCI TC1581217, TC1599511
DoTS DT.40180403, DT.60100474, DT.99841618
NIA Mouse Gene Index U022070
Consensus CDS Project CCDS35783.1
International Mouse Phenotyping Consortium Status Kcnj9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050096 VEGA Gene Model | MGI Sequence Detail 8818 C57BL/6J ±  kb
transcript OTTMUST00000127410 VEGA | MGI Sequence Detail 3857 Not Applicable 
polypeptide OTTMUSP00000068748 VEGA | MGI Sequence Detail 393 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(161 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR014756 Immunoglobulin E-set
InterPro IPR016449 Potassium channel, inwardly rectifying, Kir
InterPro IPR003276 Potassium channel, inwardly rectifying, Kir3.3
InterPro IPR013518 Potassium channel, inwardly rectifying, Kir, cytoplasmic
Protein Ontology PR:000002004 G protein-activated inward rectifier potassium channel 3
References
(Earliest) J:29320 Lesage F, et al., Cloning provides evidence for a family of inward rectifier and G-protein coupled K+ channels in the brain. FEBS Lett. 1994 Oct 10;353(1):37-42
(Latest) J:222946 Herman MA, et al., GIRK3 gates activation of the mesolimbic dopaminergic pathway by ethanol. Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7091-6
All references(63)
Other
accession IDs
MGD-MRK-37041, MGI:1920728

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory