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Arhgap39 Gene Detail
Summary
  • Symbol
    Arhgap39
  • Name
    Rho GTPase activating protein 39
  • Synonyms
    D15Wsu169e
  • Feature Type
    protein coding gene
  • IDs
    MGI:107858
    NCBI Gene: 223666
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:76608183-76702366 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 36.28 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    497 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107858
 protein coding gene Chr15:76608183-76702370 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022012
 protein coding gene Chr15:76826497-76929608 (-)
A/J MGP_AJ_G0021970
 protein coding gene Chr15:74011136-74104910 (-)
AKR/J MGP_AKRJ_G0021953
 protein coding gene Chr15:76022086-76121598 (-)
BALB/cJ MGP_BALBcJ_G0021979
 protein coding gene Chr15:74036735-74130066 (-)
C3H/HeJ MGP_C3HHeJ_G0021751
 protein coding gene Chr15:76067142-76165979 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022419
 protein coding gene Chr15:79687168-79785718 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019948
 protein coding gene Chr15:70670811-70760644 (-)
CAST/EiJ MGP_CASTEiJ_G0021270
 protein coding gene Chr15:76873645-76966815 (-)
CBA/J MGP_CBAJ_G0021718
 protein coding gene Chr15:82209754-82314673 (-)
DBA/2J MGP_DBA2J_G0021843
 protein coding gene Chr15:73549465-73643639 (-)
FVB/NJ MGP_FVBNJ_G0021823
 protein coding gene Chr15:72607992-72700681 (-)
LP/J MGP_LPJ_G0021914
 protein coding gene Chr15:76907038-77003629 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021848
 protein coding gene Chr15:87557018-87655273 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022439
 protein coding gene Chr15:76296122-76392161 (-)
PWK/PhJ MGP_PWKPhJ_G0021011
 protein coding gene Chr15:73715575-73812873 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020851
 protein coding gene Chr15:75993110-76090306 (-)
WSB/EiJ MGP_WSBEiJ_G0021322
 protein coding gene Chr15:76386563-76486087 (-)



Homology
more
  • Human Ortholog
    ARHGAP39, Rho GTPase activating protein 39
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARHGAP39, Rho GTPase activating protein 39
  • Synonyms
    CrGAP, Vilse
  • Links
    NCBI Gene ID: 80728
    neXtProt AC: NX_Q9C0H5
    UniProt: Q9C0H5

  • Chr Location
    8q24.3; chr8:144529179-144700362 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    31 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    933
  • Tissues
    37
  • cDNA Data
    49
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 223666 NCBI Gene Model | MGI Sequence Detail 94184 C57BL/6J ±  kb
transcript NM_001416283 RefSeq | MGI Sequence Detail 4873 ZRU/MplStud  
polypeptide P59281 UniProt | EBI | MGI Sequence Detail 1107 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 50
    cDNA 49
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-36435, MGI:2146070
References
more
  • Summaries
    All 58
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 5
    Phenotypes 31
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory