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Arhgap39 Gene Detail
Summary
  • Symbol
    Arhgap39
  • Name
    Rho GTPase activating protein 39
  • Synonyms
    D15Wsu169e
  • Feature Type
    protein coding gene
  • IDs
    MGI:107858
    NCBI Gene: 223666
Location & Maps
more
  • Sequence Map
    Chr15:76723985-76818170 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      94186 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 36.28 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    ARHGAP39, Rho GTPase activating protein 39
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ARHGAP39, Rho GTPase activating protein 39
    Orthology source: HomoloGene
  • Synonyms
    CrGAP, Vilse
  • Links
    NCBI Gene ID: 80728
    neXtProt AC: NX_Q9C0H5

  • Chr Location
    8q24.3; chr8:144529179-144700520 (-)  GRCh38.p2

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    27 phenotype references
  • All Mutations and Alleles
    49
  • Chemically induced (other)
    3
  • Gene trapped
    41
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    5 involving Arhgap39
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000039938 VEGA Gene Model | MGI Sequence Detail 94186 C57BL/6J ±  kb
transcript OTTMUST00000103776 VEGA | MGI Sequence Detail 4500 Not Applicable  
polypeptide OTTMUSP00000058008 VEGA | MGI Sequence Detail 1109 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    497 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 48
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
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MGD-MRK-36435, MGI:2146070
References
more
  • Summaries
    All 31
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 2
    Phenotypes 27
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory