Tpt1-ps1 Pseudogene Detail

Summary

• Symbol
  Tpt1-ps1
• Name
  tumor protein, translationally-controlled, pseudogene 1
• Synonyms
  Gm12487, Tpt1-rs

• Feature Type
  pseudogene
• IDs
  MGI:107797
  NCBI Gene: 668583
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:101140776-101141211 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 44.06 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107797	pseudogene	Chr3:101140776-101141439 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012317	pseudogene	Chr3:102396468-102396903 (+)
A/J	MGP_AJ_G0012311	pseudogene	Chr3:99159418-99159853 (+)
AKR/J	MGP_AKRJ_G0012277	pseudogene	Chr3:101602604-101603039 (+)
BALB/cJ	MGP_BALBcJ_G0012294	pseudogene	Chr3:98911395-98911830 (+)
C3H/HeJ	MGP_C3HHeJ_G0012159	pseudogene	Chr3:101892525-101892960 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012607	pseudogene	Chr3:106151758-106152193 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010988	pseudogene	Chr3:95355189-95355623 (+)
CAST/EiJ	MGP_CASTEiJ_G0011930	pseudogene	Chr3:100989403-100989838 (+)
CBA/J	MGP_CBAJ_G0012137	pseudogene	Chr3:109809107-109809542 (+)
DBA/2J	MGP_DBA2J_G0012193	pseudogene	Chr3:98398067-98398502 (+)
FVB/NJ	MGP_FVBNJ_G0012197	pseudogene	Chr3:96332675-96335786 (+)
LP/J	MGP_LPJ_G0012263	pseudogene	Chr3:103752433-103752868 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012199	pseudogene	Chr3:116014205-116014640 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012613	pseudogene	Chr3:101083102-101083537 (+)
PWK/PhJ	MGP_PWKPhJ_G0011775	pseudogene	Chr3:98153589-98154024 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011588	pseudogene	Chr3:99169110-99169545 (+)
WSB/EiJ	MGP_WSBEiJ_G0011960	pseudogene	Chr3:101648443-101648878 (+)

Homology

• Gene Tree
  Tpt1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Tpt1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083546 (Evidence)
• NCBI Gene
  668583

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083546	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000120257	Ensembl | MGI Sequence Detail	436	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-36374, MGI:3650950

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426