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Atp5j Gene Detail
Summary
  • Symbol
    Atp5j
  • Name
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
  • Feature Type
    protein coding gene
  • IDs
    MGI:107777
    NCBI Gene: 11957
  • Gene Overview
    MyGene.info: ATP5PF
  • Alliance
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:84827871-84835625 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 46.92 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107777
protein coding gene Chr16:84827866-84835625 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022969
protein coding gene Chr16:85410043-85418910 (-)
A/J MGP_AJ_G0022937
protein coding gene Chr16:81517654-81525418 (-)
AKR/J MGP_AKRJ_G0022907
protein coding gene Chr16:83917708-83925467 (-)
BALB/cJ MGP_BALBcJ_G0022939
protein coding gene Chr16:81976164-81983970 (-)
C3H/HeJ MGP_C3HHeJ_G0022701
protein coding gene Chr16:84492818-84500582 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023386
protein coding gene Chr16:88184515-88192274 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020890
protein coding gene Chr16:79464274-79472132 (-)
CAST/EiJ MGP_CASTEiJ_G0022223
protein coding gene Chr16:84938585-84946304 (-)
CBA/J MGP_CBAJ_G0022670
protein coding gene Chr16:91942411-91950168 (-)
DBA/2J MGP_DBA2J_G0022804
protein coding gene Chr16:81396946-81404710 (-)
FVB/NJ MGP_FVBNJ_G0022779
protein coding gene Chr16:80596075-80603884 (-)
LP/J MGP_LPJ_G0022873
protein coding gene Chr16:85095459-85103218 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022798
protein coding gene Chr16:96402103-96409867 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023404
protein coding gene Chr16:84396983-84404740 (-)
PWK/PhJ MGP_PWKPhJ_G0021965
protein coding gene Chr16:81558684-81566638 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021795
protein coding gene Chr16:83889722-83901096 (-)
WSB/EiJ MGP_WSBEiJ_G0022271
protein coding gene Chr16:84645284-84653063 (-)



Homology
more
  • Human Ortholog
    ATP5PF, ATP synthase peripheral stalk subunit F6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATP5PF, ATP synthase peripheral stalk subunit F6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATP5, ATP5A, ATP5J, ATPM, CF6, F6
  • Links
    NCBI Gene ID: 522
    neXtProt AC: NX_P18859
    UniProt: P18859

  • Chr Location
    21q21.3; chr21:25724480-25735654 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 11957 NCBI Gene Model | MGI Sequence Detail 7755 C57BL/6J ±  kb
transcript NM_001302213 RefSeq | MGI Sequence Detail 875 C57BL/6  
polypeptide P97450 UniProt | EBI | MGI Sequence Detail 108 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004461 ATP synthase-coupling factor 6, mitochondrial
  • InterPro Domains
    IPR008387 ATP synthase-coupling factor 6, mitochondrial
    IPR036204 ATP synthase-coupling factor 6 superfamily, mitochondrial
Molecular
Reagents
less
  • All nucleic 275
    cDNA 271
    Primer pair 3
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-36354
References
more
  • Summaries
    All 45
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 7
    Phenotypes 14
  • Earliest
    J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
  • Latest
    J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory