Tpd52-ps Pseudogene Detail

Summary

• Symbol
  Tpd52-ps
• Name
  tumor protein D52, pseudogene
• Synonyms
  Tpd52-rs1

• Feature Type
  pseudogene
• IDs
  MGI:107737
  NCBI Gene: 107730
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:80406913-80407435 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 37.77 cM, cytoband C1-C3
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107737	pseudogene	Chr8:80405464-80407577 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036476	pseudogene	Chr8:80362981-80363539 (-)
A/J	MGP_AJ_G0036462	pseudogene	Chr8:77173228-77173786 (-)
AKR/J	MGP_AKRJ_G0036412	pseudogene	Chr8:79478855-79479413 (-)
BALB/cJ	MGP_BALBcJ_G0036452	pseudogene	Chr8:77287635-77288193 (-)
C3H/HeJ	MGP_C3HHeJ_G0036145	pseudogene	Chr8:80104301-80106638 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036965	pseudogene	Chr8:83450007-83450565 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0036117	pseudogene	Chr8:86387348-86387906 (-)
DBA/2J	MGP_DBA2J_G0036293	pseudogene	Chr8:76869231-76869789 (-)
FVB/NJ	MGP_FVBNJ_G0036247	pseudogene	Chr8:75838043-75838601 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0036248	pseudogene	Chr8:88944364-88945863 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037079	pseudogene	Chr8:79500995-79501553 (-)
PWK/PhJ	MGP_PWKPhJ_G0035034	pseudogene	Chr8:76139074-76141633 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Tpd52-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Tpd52-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000094594 (Evidence)
• NCBI Gene
  107730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094594	Ensembl Gene Model | MGI Sequence Detail	523	C57BL/6J
transcript	ENSMUST00000178097	Ensembl | MGI Sequence Detail	523	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-36313

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:34618 Byrne JA, et al., Definition of the tumor protein D52 (TPD52) gene family through cloning of D52 homologues in human (hD53) and mouse (mD52). Genomics. 1996 Aug 1;35(3):523-32
• Latest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Tpd52-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81885	Chr8:80407455-80407458 (-)	-22 bp