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Usp39 Gene Detail
Summary
  • Symbol
    Usp39
  • Name
    ubiquitin specific peptidase 39
  • Synonyms
    CGI-21, D6Wsu157e, SAD1
  • Feature Type
    protein coding gene
  • IDs
    MGI:107622
    NCBI Gene: 28035
  • Gene Overview
    MyGene.info: USP39
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:72318678-72345184 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 32.27 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    172 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107622
protein coding gene Chr6:72318676-72345214 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030870
protein coding gene Chr6:72865828-72892678 (-)
A/J MGP_AJ_G0030840
protein coding gene Chr6:70039234-70067259 (-)
AKR/J MGP_AKRJ_G0030769
protein coding gene Chr6:72096221-72129849 (-)
BALB/cJ MGP_BALBcJ_G0030851
protein coding gene Chr6:70069717-70095933 (-)
C3H/HeJ MGP_C3HHeJ_G0030861
protein coding gene Chr6:112112478-112138956 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031309
protein coding gene Chr6:74778980-74806510 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028498
protein coding gene Chr6:69186458-69212564 (-)
CAST/EiJ MGP_CASTEiJ_G0029959
protein coding gene Chr6:71962832-71989882 (-)
CBA/J MGP_CBAJ_G0030538
protein coding gene Chr6:77823577-77856922 (-)
DBA/2J MGP_DBA2J_G0030690
protein coding gene Chr6:69436240-69462735 (-)
FVB/NJ MGP_FVBNJ_G0030643
protein coding gene Chr6:68817188-68844245 (-)
LP/J MGP_LPJ_G0030769
protein coding gene Chr6:72770594-72799643 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030678
protein coding gene Chr6:81216404-81244334 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031335
protein coding gene Chr6:71909944-71942157 (-)
PWK/PhJ MGP_PWKPhJ_G0029675
protein coding gene Chr6:68339070-68367799 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029503
protein coding gene Chr6:70642575-70670277 (-)
WSB/EiJ MGP_WSBEiJ_G0030041
protein coding gene Chr6:72277139-72305047 (-)



Homology
more
  • Human Ortholog
    USP39, ubiquitin specific peptidase 39
  • Vertebrate Orthologs
    10
  • Human Ortholog
    USP39, ubiquitin specific peptidase 39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    65K, CGI-21, HSPC332, SAD1, SNRNP65
  • Links
    NCBI Gene ID: 10713
    neXtProt AC: NX_Q53GS9
    UniProt: Q53GS9

  • Chr Location
    2p11.2; chr2:85602842-85649284 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 13183
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: USP39
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000056305 Ensembl Gene Model | MGI Sequence Detail 26507 C57BL/6J ±  kb
    transcript ENSMUST00000070345 Ensembl | MGI Sequence Detail 2244 Not Applicable  
    polypeptide ENSMUSP00000064515 Ensembl | MGI Sequence Detail 564 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 96
      cDNA 94
      Primer pair 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-36196, MGI:2141363, MGI:2141516
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 6
      Gene Ontology 3
      Phenotypes 10
    • Earliest
      J:44486 Lesh JS, et al., Mapping of the mouse corticotropin-releasing hormone receptor 2 gene (Crhr2) to chromosome 6. Mamm Genome. 1997 Dec;8(12):944-5
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory