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Npat
Gene Detail
 Symbol
Name
ID
Npat
nuclear protein in the AT region
MGI:107605
Feature Type protein coding gene
Genetic Map
Chromosome 9
29.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:53537047-53574342 bp, + strand
From VEGA annotation of GRCm38

  37296 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1888  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Npat

Human
homologs
Human Homolog NPAT, nuclear protein, ataxia-telangiectasia locus
NCBI Gene ID 4863
neXtProt AC  NX_Q14207
Human Synonyms  E14, E14/NPAT, p220
Human Chr (Location)  11q22-q23; chr11:108157390-108222638 (-)  GRCh38
Alleles
and
phenotypes
All alleles(17) : Gene trapped(14) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process cell cycle, positive regulation of transcription, DNA-templated, ...
Component Cajal body, cytoplasm, ...
Function protein C-terminus binding, protein N-terminus binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(9)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031590 (Evidence)
Ensembl Gene ModelENSMUSG00000033054 (Evidence)
Entrez Gene244879 (Evidence)
Consensus CDS ProjectCCDS40637.1
International Mouse Knockout Project StatusNpat
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031590 VEGA Gene Model | MGI Sequence Detail 37296 C57BL/6J ±  kb
transcript OTTMUST00000078238 VEGA | MGI Sequence Detail 6062 Not Applicable 
polypeptide OTTMUSP00000041587 VEGA | MGI Sequence Detail 1420 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(4) UniProt(1)
Polymorphisms RFLP(1) : SNPs within 2kb(47 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006594 LisH dimerisation motif
Protein Ontology PR:000011353 protein NPAT
References (Earliest) J:33856 Matsuda Y, et al., Comparative genome mapping of the ataxia-telangiectasia region in mouse, rat, and Syrian hamster. Genomics. 1996 Jun 15;34(3):347-52
(Latest) J:181069 De Cola A, et al., FLASH is essential during early embryogenesis and cooperates with p73 to regulate histone gene transcription. Oncogene. 2012 Feb 2;31(5):573-82
All references(35)
Other
accession IDs
MGD-MRK-36179, MGI:2143040, MGI:2143360

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory