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Cdh9 Gene Detail
Summary
  • Symbol
    Cdh9
  • Name
    cadherin 9
  • Synonyms
    T1-cadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:107433
    NCBI Gene: 12565
  • Gene Overview
    MyGene.info: CDH9
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr15:16728756-16857094 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 7.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    981 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107433
protein coding gene Chr15:16728550-16857097 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021742
protein coding gene Chr15:14258984-14339867 (+)
A/J MGP_AJ_G0021702
protein coding gene Chr15:13797504-13876679 (+)
AKR/J MGP_AKRJ_G0021680
protein coding gene Chr15:14148191-14233291 (+)
BALB/cJ MGP_BALBcJ_G0021709
protein coding gene Chr15:13754990-13840451 (+)
C3H/HeJ MGP_C3HHeJ_G0021485
protein coding gene Chr15:14057003-14190831 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022148
protein coding gene Chr15:14816368-14921078 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019689
protein coding gene Chr15:12902702-13023666 (+)
CAST/EiJ MGP_CASTEiJ_G0021001
protein coding gene Chr15:14328837-14468076 (+)
CBA/J MGP_CBAJ_G0021454
protein coding gene Chr15:15314407-15422678 (+)
DBA/2J MGP_DBA2J_G0021578
protein coding gene Chr15:13559907-13689289 (+)
FVB/NJ MGP_FVBNJ_G0021556
protein coding gene Chr15:13364096-13445798 (+)
LP/J MGP_LPJ_G0021646
protein coding gene Chr15:14216929-14299107 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021581
protein coding gene Chr15:16334550-16509306 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022171
protein coding gene Chr15:14199267-14275267 (+)
PWK/PhJ MGP_PWKPhJ_G0020744
protein coding gene Chr15:13775230-13909637 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020582
protein coding gene Chr15:14100066-14180886 (+)
WSB/EiJ MGP_WSBEiJ_G0021057
protein coding gene Chr15:14094539-14232818 (+)



Homology
more
  • Human Ortholog
    CDH9, cadherin 9
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CDH9, cadherin 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 1007
    neXtProt AC: NX_Q9ULB4
    UniProt: Q9ULB4

  • Chr Location
    5p14.1; chr5:26880600-27038582 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous knockout results in the formation of abnormal axonal arbors in some retinal type 5 bipolar cells.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025370 Ensembl Gene Model | MGI Sequence Detail 128339 C57BL/6J ±  kb
transcript ENSMUST00000228307 Ensembl | MGI Sequence Detail 3539 Not Applicable  
polypeptide ENSMUSP00000154022 Ensembl | MGI Sequence Detail 788 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 8
    Primer pair 5

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-35904
References
more
  • Summaries
    All 40
    Developmental Gene Expression 13
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:256032 Basu R, et al., Heterophilic Type II Cadherins Are Required for High-Magnitude Synaptic Potentiation in the Hippocampus. Neuron. 2017 Sep 27;96(1):160-176.e8

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory