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Slc50a1 Gene Detail
Summary
  • Symbol
    Slc50a1
  • Name
    solute carrier family 50 (sugar transporter), member 1
  • Synonyms
    Rag1ap1, Rga
  • Feature Type
    protein coding gene
  • IDs
    MGI:107417
    NCBI Gene: 19729
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:89268246-89270570 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 39.04 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107417
protein coding gene Chr3:89268246-89270570 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027428
protein coding gene Chr3:89477164-89479488 (-)
A/J MGP_AJ_G0027392
protein coding gene Chr3:86513419-86515743 (-)
AKR/J MGP_AKRJ_G0027356
protein coding gene Chr3:88603773-88606097 (-)
BALB/cJ MGP_BALBcJ_G0027401
protein coding gene Chr3:86478491-86480815 (-)
C3H/HeJ MGP_C3HHeJ_G0027143
protein coding gene Chr3:88808051-88810375 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027847
protein coding gene Chr3:92863618-92865942 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025199
protein coding gene Chr3:81993652-81996152 (-)
CAST/EiJ MGP_CASTEiJ_G0026589
protein coding gene Chr3:89158007-89160331 (-)
CBA/J MGP_CBAJ_G0027117
protein coding gene Chr3:96038387-96040711 (-)
DBA/2J MGP_DBA2J_G0027255
protein coding gene Chr3:85892358-85894682 (-)
FVB/NJ MGP_FVBNJ_G0027223
protein coding gene Chr3:84233533-84235857 (-)
LP/J MGP_LPJ_G0027364
protein coding gene Chr3:90551364-90553688 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027243
protein coding gene Chr3:102258452-102260776 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027906
protein coding gene Chr3:88359224-88361548 (-)
PWK/PhJ MGP_PWKPhJ_G0026323
protein coding gene Chr3:85766749-85769065 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026142
protein coding gene Chr3:87526170-87528493 (-)
WSB/EiJ MGP_WSBEiJ_G0026671
protein coding gene Chr3:88752830-88755154 (-)



Homology
more
  • Human Ortholog
    SLC50A1, solute carrier family 50 member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC50A1, solute carrier family 50 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HsSWEET1, RAG1AP1, SCP, slv, SWEET1
  • Links
    NCBI Gene ID: 55974
    neXtProt AC: NX_Q9BRV3
    UniProt: Q9BRV3

  • Chr Location
    1q22; chr1:155135253-155138858 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Slc50a1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 19729 NCBI Gene Model | MGI Sequence Detail 2325 C57BL/6J ±  kb
transcript NM_009057 RefSeq | MGI Sequence Detail 1031 C57BL/6  
polypeptide Q9CXK4 UniProt | EBI | MGI Sequence Detail 221 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 44
    cDNA 44

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-35886
References
more
  • Summaries
    All 39
    Diseases 1
    Gene Ontology 7
    Phenotypes 11
  • Earliest
    J:33663 Tagoh H, et al., Molecular cloning and characterization of a novel stromal cell-derived cDNA encoding a protein that facilitates gene activation of recombination activating gene (RAG)-1 in human lymphoid progenitors. Biochem Biophys Res Commun. 1996 Apr 25;221(3):744-9
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory