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Slc50a1
Gene Detail
Symbol

Name
ID
Slc50a1
solute carrier family 50 (sugar transporter), member 1
MGI:107417
Synonyms
Rag1ap1, Rga
Feature Type
protein coding gene
Genetic Map
Chromosome 3
39.04 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:89268246-89270570 bp, - strand
From VEGA annotation of GRCm38

  2325 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40647  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC50A1
Gene Tree: Slc50a1

Human
homologs
SLC50A1, solute carrier family 50 (sugar efflux transporter), member 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 55974
neXtProt AC: NX_Q9BRV3

Human Synonyms: HsSWEET1, RAG1AP1, SCP, slv, SWEET1

Human Chr (Location): 1q22; chr1:155135344-155138858 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Interactions
Slc50a1 interacts with 12 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process carbohydrate transport, DNA recombination, ...
Component endomembrane system, Golgi apparatus, ...
Function glucoside transmembrane transporter activity
External Resources: FuncBase
Expression
cDNA source data(41)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc50a1    NEW 
Molecular
reagents
All nucleic(43) cDNA(43)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000021858 (Evidence)
Ensembl Gene Model ENSMUSG00000027953 (Evidence)
Entrez Gene 19729 (Evidence)
UniGene 17958
DFCI TC1680470, TC1579392
DoTS DT.101383631, DT.101383630, DT.490353
NIA Mouse Gene Index U024273
Consensus CDS Project CCDS17500.1
International Mouse Phenotyping Consortium Status Slc50a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021858 VEGA Gene Model | MGI Sequence Detail 2325 C57BL/6J ±  kb
transcript OTTMUST00000051870 VEGA | MGI Sequence Detail 1022 Not Applicable 
polypeptide OTTMUSP00000024485 VEGA | MGI Sequence Detail 221 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(9 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018180 RAG1-activating protein 1
Protein Ontology PR:000013689 sugar transporter SWEET1
References
(Earliest) J:33663 Tagoh H, et al., Molecular cloning and characterization of a novel stromal cell-derived cDNA encoding a protein that facilitates gene activation of recombination activating gene (RAG)-1 in human lymphoid progenitors. Biochem Biophys Res Commun. 1996 Apr 25;221(3):744-9
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)
Other
accession IDs
MGD-MRK-35886

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory