About   Help   FAQ
Ubfd1 Gene Detail
Summary
  • Symbol
    Ubfd1
  • Name
    ubiquitin family domain containing 1
  • Synonyms
    D7Wsu105e, D7Wsu128e
  • Feature Type
    protein coding gene
  • IDs
    MGI:107301
    NCBI Gene: 28018
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:122067183-122082199 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 65.35 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107301
protein coding gene Chr7:122067175-122082199 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032949
protein coding gene Chr7:126131125-126146131 (+)
A/J MGP_AJ_G0032932
protein coding gene Chr7:122864815-122879829 (+)
AKR/J MGP_AKRJ_G0032864
protein coding gene Chr7:125986127-126001146 (+)
BALB/cJ MGP_BALBcJ_G0032937
protein coding gene Chr7:122554802-122569965 (+)
C3H/HeJ MGP_C3HHeJ_G0032647
protein coding gene Chr7:125913774-125928793 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033443
protein coding gene Chr7:131111470-131126490 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030415
protein coding gene Chr7:124187729-124202881 (+)
CAST/EiJ MGP_CASTEiJ_G0031975
protein coding gene Chr7:117690569-117705581 (+)
CBA/J MGP_CBAJ_G0032620
protein coding gene Chr7:135511547-135526566 (+)
DBA/2J MGP_DBA2J_G0032772
protein coding gene Chr7:120869121-120884140 (+)
FVB/NJ MGP_FVBNJ_G0032725
protein coding gene Chr7:120718766-120733841 (+)
LP/J MGP_LPJ_G0032866
protein coding gene Chr7:127577814-127592845 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032757
protein coding gene Chr7:136888367-136903823 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033463
protein coding gene Chr7:124993256-125008288 (+)
PWK/PhJ MGP_PWKPhJ_G0031683
protein coding gene Chr7:113797395-113812704 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031529
protein coding gene Chr7:111766428-111781390 (+)
WSB/EiJ MGP_WSBEiJ_G0032088
protein coding gene Chr7:125900672-125915711 (+)



Homology
more
  • Human Ortholog
    UBFD1, ubiquitin family domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBFD1, ubiquitin family domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    UBPH
  • Links
    NCBI Gene ID: 56061
    neXtProt AC: NX_O14562
    UniProt: O14562

  • Chr Location
    16p12.2; chr16:23557535-23574393 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10430
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBFD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 28018 NCBI Gene Model | MGI Sequence Detail 15017 C57BL/6J ±  kb
transcript NM_138589 RefSeq | MGI Sequence Detail 4831 C57BL/6  
polypeptide Q78JW9 UniProt | EBI | MGI Sequence Detail 368 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 17
    Primer pair 2

    Microarray probesets 8
Other
Accession IDs
less
MGD-MRK-34143, MGD-MRK-35767, MGI:106449, MGI:2141978
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/06/2019
MGI 6.14
The Jackson Laboratory