About   Help   FAQ
Cdh16 Gene Detail
Summary
  • Symbol
    Cdh16
  • Name
    cadherin 16
  • Synonyms
    KSP-cadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:106671
    NCBI Gene: 12556
  • Gene Overview
    MyGene.info: CDH16
Location & Maps
more
  • Sequence Map
    Chr8:104614141-104624396 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      10256 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.04 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CDH16, cadherin 16
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CDH16, cadherin 16
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 1014
    neXtProt AC: NX_O75309

  • Chr Location
    16q22.1; chr16:66908122-66918984 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 2997
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: CDH16
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031881 Ensembl Gene Model | MGI Sequence Detail 10256 C57BL/6J ±  kb
transcript ENSMUST00000163783 Ensembl | MGI Sequence Detail 3001 Not Applicable  
polypeptide ENSMUSP00000129663 Ensembl | MGI Sequence Detail 830 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    121 from dbSNP Build 142
  • RFLP
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 123
    cDNA 123

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-35130
References
more
  • Summaries
    All 35
    Developmental Gene Expression 10
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:33452 Thomson RB, et al., Isolation and cDNA cloning of Ksp-cadherin, a novel kidney-specific member of the cadherin multigene family. J Biol Chem. 1995 Jul 21;270(29):17594-601
  • Latest
    J:224142 Reginensi A, et al., Yap and Taz are required for Ret-dependent urinary tract morphogenesis. Development. 2015 Aug 1;142(15):2696-703

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/17/2016
MGI 6.05
The Jackson Laboratory