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Cdh16 Gene Detail
Summary
  • Symbol
    Cdh16
  • Name
    cadherin 16
  • Synonyms
    KSP-cadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:106671
    NCBI Gene: 12556
  • Gene Overview
    MyGene.info: CDH16
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:104601915-104624396 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.04 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106671
protein coding gene Chr8:104601911-104624396 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034015
protein coding gene Chr8:106768048-106778303 (-)
A/J MGP_AJ_G0033996
protein coding gene Chr8:102545137-102555496 (-)
AKR/J MGP_AKRJ_G0033922
protein coding gene Chr8:105508038-105518277 (-)
BALB/cJ MGP_BALBcJ_G0033989
protein coding gene Chr8:102749787-102760042 (-)
C3H/HeJ MGP_C3HHeJ_G0033701
protein coding gene Chr8:106216395-106226650 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034509
protein coding gene Chr8:110690445-110700700 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031452
protein coding gene Chr8:95794155-95804606 (-)
CAST/EiJ MGP_CASTEiJ_G0033028
protein coding gene Chr8:105767857-105777970 (-)
CBA/J MGP_CBAJ_G0033675
protein coding gene Chr8:114355262-114365517 (-)
DBA/2J MGP_DBA2J_G0033829
protein coding gene Chr8:101890408-101900663 (-)
FVB/NJ MGP_FVBNJ_G0033776
protein coding gene Chr8:100829271-100839384 (-)
LP/J MGP_LPJ_G0033920
protein coding gene Chr8:106957324-106968730 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033818
protein coding gene Chr8:117514592-117524845 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034527
protein coding gene Chr8:105449650-105459903 (-)
PWK/PhJ MGP_PWKPhJ_G0032730
protein coding gene Chr8:101300813-101311057 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032569
protein coding gene Chr8:104262653-104274206 (-)
WSB/EiJ MGP_WSBEiJ_G0033143
protein coding gene Chr8:106145579-106155827 (-)



Homology
more
  • Human Ortholog
    CDH16, cadherin 16
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CDH16, cadherin 16
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 1014
    neXtProt AC: NX_O75309
    UniProt: O75309

  • Chr Location
    16q22.1; chr16:66908122-66918984 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2997
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDH16
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12556 NCBI Gene Model | MGI Sequence Detail 22482 C57BL/6J ±  kb
transcript NM_007663 RefSeq | MGI Sequence Detail 3025 C57BL/6  
polypeptide O88338 UniProt | EBI | MGI Sequence Detail 830 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 124
    cDNA 124

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-35130
References
more
  • Summaries
    All 38
    Developmental Gene Expression 10
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:33452 Thomson RB, et al., Isolation and cDNA cloning of Ksp-cadherin, a novel kidney-specific member of the cadherin multigene family. J Biol Chem. 1995 Jul 21;270(29):17594-601
  • Latest
    J:241013 Grassmeyer J, et al., Elf5 is a principal cell lineage specific transcription factor in the kidney that contributes to Aqp2 and Avpr2 gene expression. Dev Biol. 2017 Apr 01;424(1):77-89

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory