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Trim21 Gene Detail
Summary
  • Symbol
    Trim21
  • Name
    tripartite motif-containing 21
  • Synonyms
    Ro52, Ssa1
  • Feature Type
    protein coding gene
  • IDs
    MGI:106657
    NCBI Gene: 20821
  • Gene Overview
    MyGene.info: TRIM21
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:102557920-102565482 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 54.76 cM, cytoband F1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106657
protein coding gene Chr7:102557920-102565486 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032614
protein coding gene Chr7:105622920-105630452 (-)
A/J MGP_AJ_G0032590
protein coding gene Chr7:102916472-102924004 (-)
AKR/J MGP_AKRJ_G0032526
protein coding gene Chr7:105381482-105389014 (-)
BALB/cJ MGP_BALBcJ_G0032601
protein coding gene Chr7:102616212-102623744 (-)
C3H/HeJ MGP_C3HHeJ_G0032315
protein coding gene Chr7:105777316-105784848 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033098
protein coding gene Chr7:109587058-109596286 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030092
protein coding gene Chr7:105263249-105270842 (-)
CAST/EiJ MGP_CASTEiJ_G0031641
protein coding gene Chr7:97330561-97338116 (-)
CBA/J MGP_CBAJ_G0032281
protein coding gene Chr7:113425880-113433412 (-)
DBA/2J MGP_DBA2J_G0032433
protein coding gene Chr7:101255152-101262684 (-)
FVB/NJ MGP_FVBNJ_G0032389
protein coding gene Chr7:101021291-101028823 (-)
LP/J MGP_LPJ_G0032522
protein coding gene Chr7:106933722-106941254 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032423
protein coding gene Chr7:114673450-114681001 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033120
protein coding gene Chr7:104662095-104669625 (-)
PWK/PhJ MGP_PWKPhJ_G0031359
protein coding gene Chr7:94361842-94369399 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031200
protein coding gene Chr7:91944130-91952053 (-)
WSB/EiJ MGP_WSBEiJ_G0031758
protein coding gene Chr7:105341421-105348951 (-)



Homology
more
  • Human Ortholog
    TRIM21, tripartite motif containing 21
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TRIM21, tripartite motif containing 21
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RNF81, RO52, Ro/SSA, SSA, SSA1
  • Links
    NCBI Gene ID: 6737
    neXtProt AC: NX_P19474
    UniProt: P19474

  • Chr Location
    11p15.4; chr11:4384897-4393696 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    12 phenotypes from 2 alleles in 2 genetic backgrounds
    4 images
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Unmanipulated homozygous mice are normal, but leads to tissue inflammation and systemic autoimmunity in vivo and reduced number of CD11c+ dendritic cells from mutant bone marrow in vitro.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 20821 NCBI Gene Model | MGI Sequence Detail 7563 C57BL/6J ±  kb
    transcript NM_009277 RefSeq | MGI Sequence Detail 2790 C57BL/6  
    polypeptide Q62191 UniProt | EBI | MGI Sequence Detail 470 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 42
      cDNA 42

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-35115
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 4
      Gene Ontology 7
      Phenotypes 24
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:260699 Encheva V, et al., Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection. BMC Res Notes. 2018 Mar 6;11(1):166

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory