About   Help   FAQ
Ly6e Gene Detail
Summary
  • Symbol
    Ly6e
  • Name
    lymphocyte antigen 6 complex, locus E
  • Synonyms
    9804, Ly67, RIG-E, Sca-2, Tsa1, TSA-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:106651
    NCBI Gene: 17069
  • Member of
    Ly6 cluster
  • Gene Overview
    MyGene.info: LY6E
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74955051-74959905 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106651
protein coding gene Chr15:74955051-74959905 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021945
protein coding gene Chr15:74772380-74777234 (+)
A/J MGP_AJ_G0021902
protein coding gene Chr15:72090723-72096222 (+)
AKR/J MGP_AKRJ_G0021886
protein coding gene Chr15:73989411-73994259 (+)
BALB/cJ MGP_BALBcJ_G0021911
protein coding gene Chr15:72108624-72113677 (+)
C3H/HeJ MGP_C3HHeJ_G0021684
protein coding gene Chr15:74092192-74097250 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022351
protein coding gene Chr15:77589280-77594134 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019886
protein coding gene Chr15:68460179-68465039 (+)
CAST/EiJ MGP_CASTEiJ_G0021203
protein coding gene Chr15:74912553-74917406 (+)
CBA/J MGP_CBAJ_G0021650
protein coding gene Chr15:80122421-80128837 (+)
DBA/2J MGP_DBA2J_G0021775
protein coding gene Chr15:71702331-71707185 (+)
FVB/NJ MGP_FVBNJ_G0021757
protein coding gene Chr15:70722703-70727557 (+)
LP/J MGP_LPJ_G0021847
protein coding gene Chr15:74856562-74861416 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021780
protein coding gene Chr15:85438304-85453376 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022372
protein coding gene Chr15:74327951-74334619 (+)
PWK/PhJ MGP_PWKPhJ_G0020944
protein coding gene Chr15:71802822-71807662 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020784
protein coding gene Chr15:74180427-74185272 (+)
WSB/EiJ MGP_WSBEiJ_G0021255
protein coding gene Chr15:74356096-74360959 (+)



Homology
more
  • Human Ortholog
    LY6E, lymphocyte antigen 6 family member E
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LY6E, lymphocyte antigen 6 family member E
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RIGE, RIG-E, SCA2, SCA-2, TSA-1
  • Links
    NCBI Gene ID: 4061
    neXtProt AC: NX_Q16553
    UniProt: Q16553

  • Chr Location
    8q24.3; chr8:143018485-143022410 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    27 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene die as embryos as a result of heart defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 17069 NCBI Gene Model | MGI Sequence Detail 4855 C57BL/6J ±  kb
    transcript NM_001164036 RefSeq | MGI Sequence Detail 2281 C57BL/6  
    polypeptide Q64253 UniProt | EBI | MGI Sequence Detail 130 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      9 Sequences
    • InterPro Domains
      IPR016054 Ly-6 antigen/uPA receptor-like
    Molecular
    Reagents
    less
    • All nucleic 895
      Genomic 1
      cDNA 892
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-15264, MGD-MRK-35109
    References
    more
    • Summaries
      All 67
      Developmental Gene Expression 10
      Diseases 1
      Gene Ontology 4
      Phenotypes 27
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:263810 Langford MB, et al., Deletion of the Syncytin A receptor Ly6e impairs syncytiotrophoblast fusion and placental morphogenesis causing embryonic lethality in mice. Sci Rep. 2018 Mar 2;8(1):3961

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory