Gpx2-ps1 Pseudogene Detail

Summary

• Symbol
  Gpx2-ps1
• Name
  glutathione peroxidase 2, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:106627
  NCBI Gene: 14777
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:99913882-99914452 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 54.34 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  15
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_106627	pseudogene	Chr7:99913751-99914768 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013975	pseudogene	Chr7:103137605-103137907 (+)
A/J	MGP_AJ_G0013993	pseudogene	Chr7:100545898-100546200 (+)
AKR/J	MGP_AKRJ_G0013928	pseudogene	Chr7:102934439-102934741 (+)
BALB/cJ	MGP_BALBcJ_G0013949	pseudogene	Chr7:100220528-100220830 (+)
C3H/HeJ	MGP_C3HHeJ_G0013786	pseudogene	Chr7:103305883-103306185 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009782	pseudogene	Chr12:71331832-71332135 (-)
CAST/EiJ	MGP_CASTEiJ_G0010629	pseudogene	Chr12:71508170-71508473 (-)
CBA/J	MGP_CBAJ_G0013764	pseudogene	Chr7:110740985-110741287 (+)
DBA/2J	MGP_DBA2J_G0013842	pseudogene	Chr7:98877877-98878179 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013917	pseudogene	Chr7:104494015-104494317 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014343	pseudogene	Chr7:102205563-102205865 (+)
PWK/PhJ	MGP_PWKPhJ_G0010519	pseudogene	Chr12:68202199-68202502 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010331	pseudogene	Chr12:70218428-70218731 (-)
WSB/EiJ	MGP_WSBEiJ_G0010673	pseudogene	Chr12:76326233-76326536 (-)

Homology

• Gene Tree
  Gpx2-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gpx2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000089987 (Evidence)
• NCBI Gene
  14777

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089987	Ensembl Gene Model | MGI Sequence Detail	571	C57BL/6J
transcript	ENSMUST00000160622	Ensembl | MGI Sequence Detail	571	Not Applicable

Molecular
Reagents

• All nucleic 7

  Genomic 5

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-35084, MGI:3034489

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gpx2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68108	Chr7:99913852-99913874 (+)	-19 bp