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Imp4 Gene Detail
Summary
  • Symbol
    Imp4
  • Name
    IMP4, U3 small nucleolar ribonucleoprotein
  • Feature Type
    protein coding gene
  • IDs
    MGI:106572
    NCBI Gene: 27993
  • Gene Overview
    MyGene.info: IMP4
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:34439829-34445747 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 13.22 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    122 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106572
protein coding gene Chr1:34439829-34449356 (.)
129S1/SvImJ MGP_129S1SvImJ_G0015908
protein coding gene Chr1:32824667-32835124 (+)
A/J MGP_AJ_G0015892
protein coding gene Chr1:32042799-32052294 (+)
AKR/J MGP_AKRJ_G0015848
protein coding gene Chr1:32428843-32439874 (+)
BALB/cJ MGP_BALBcJ_G0015846
protein coding gene Chr1:31691592-31701090 (+)
C3H/HeJ MGP_C3HHeJ_G0015680
protein coding gene Chr1:32628359-32637809 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016299
protein coding gene Chr1:34318415-34329887 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014021
protein coding gene Chr1:29203181-29212674 (+)
CAST/EiJ MGP_CASTEiJ_G0015260
protein coding gene Chr1:32484492-32493923 (+)
CBA/J MGP_CBAJ_G0015651
protein coding gene Chr1:35276079-35285585 (+)
DBA/2J MGP_DBA2J_G0015752
protein coding gene Chr1:31366468-31376061 (+)
FVB/NJ MGP_FVBNJ_G0015754
protein coding gene Chr1:30916064-30925572 (+)
LP/J MGP_LPJ_G0015822
protein coding gene Chr1:33166462-33175679 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015774
protein coding gene Chr1:37525821-37535308 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016346
protein coding gene Chr1:32418070-32427554 (+)
PWK/PhJ MGP_PWKPhJ_G0015043
protein coding gene Chr1:31097266-31106825 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014826
protein coding gene Chr1:32393821-32403226 (+)
WSB/EiJ MGP_WSBEiJ_G0015322
protein coding gene Chr1:32402981-32412686 (+)



Homology
more
  • Human Ortholog
    IMP4, IMP4, U3 small nucleolar ribonucleoprotein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    IMP4, IMP4, U3 small nucleolar ribonucleoprotein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BXDC4
  • Links
    NCBI Gene ID: 92856
    neXtProt AC: NX_Q96G21
    UniProt: Q96G21

  • Chr Location
    2q21.1; chr2:130342225-130347961 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 27993 NCBI Gene Model | MGI Sequence Detail 5919 C57BL/6J ±  kb
transcript NM_178601 RefSeq | MGI Sequence Detail 2249 C57BL/6  
polypeptide Q8VHZ7 UniProt | EBI | MGI Sequence Detail 291 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 119
    cDNA 118
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-34266, MGI:2138091, MGI:2138515
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory