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Cherp Gene Detail
Summary
  • Symbol
    Cherp
  • Name
    calcium homeostasis endoplasmic reticulum protein
  • Synonyms
    5730408I11Rik, D8Wsu96e, DAN16, SCAF6
  • Feature Type
    protein coding gene
  • IDs
    MGI:106417
    NCBI Gene: 27967
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:72460489-72475226 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 35.08 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    127 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106417
protein coding gene Chr8:72460482-72475682 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033783
protein coding gene Chr8:72958510-72976166 (-)
A/J MGP_AJ_G0033765
protein coding gene Chr8:69994518-70009285 (-)
AKR/J MGP_AKRJ_G0033692
protein coding gene Chr8:72068165-72083053 (-)
BALB/cJ MGP_BALBcJ_G0033759
protein coding gene Chr8:70140138-70155040 (-)
C3H/HeJ MGP_C3HHeJ_G0033468
protein coding gene Chr8:72705009-72719930 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034279
protein coding gene Chr8:75727295-75741946 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031220
protein coding gene Chr8:64518970-64533115 (-)
CAST/EiJ MGP_CASTEiJ_G0032797
protein coding gene Chr8:72050163-72064896 (-)
CBA/J MGP_CBAJ_G0033447
protein coding gene Chr8:78435477-78451382 (-)
DBA/2J MGP_DBA2J_G0033601
protein coding gene Chr8:69743468-69759293 (-)
FVB/NJ MGP_FVBNJ_G0033546
protein coding gene Chr8:68819809-68836712 (-)
LP/J MGP_LPJ_G0033690
protein coding gene Chr8:73040817-73056460 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033590
protein coding gene Chr8:80918687-80933729 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034296
protein coding gene Chr8:72144989-72162711 (-)
PWK/PhJ MGP_PWKPhJ_G0032503
protein coding gene Chr8:69006920-69021949 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032341
protein coding gene Chr8:71077496-71093322 (-)
WSB/EiJ MGP_WSBEiJ_G0032912
protein coding gene Chr8:72447519-72462417 (-)



Homology
more
  • Human Ortholog
    CHERP, calcium homeostasis endoplasmic reticulum protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHERP, calcium homeostasis endoplasmic reticulum protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DAN16, SCAF6, SRA1
  • Links
    NCBI Gene ID: 10523
    neXtProt AC: NX_Q8IWX8
    UniProt: Q8IWX8

  • Chr Location
    19p13.11; chr19:16517889-16542452 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4656
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CHERP
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052488 Ensembl Gene Model | MGI Sequence Detail 14738 C57BL/6J ±  kb
transcript ENSMUST00000079510 Ensembl | MGI Sequence Detail 3713 Not Applicable  
polypeptide ENSMUSP00000078469 Ensembl | MGI Sequence Detail 949 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 11
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-34111, MGI:1917769
References
more
  • Summaries
    All 39
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:227344 Crisci A, et al., Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Res. 2015 Dec 2;43(21):10456-73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory