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Cherp Gene Detail
Summary
  • Symbol
    Cherp
  • Name
    calcium homeostasis endoplasmic reticulum protein
  • Synonyms
    5730408I11Rik, D8Wsu96e, DAN16, SCAF6
  • Feature Type
    protein coding gene
  • IDs
    MGI:106417
    NCBI Gene: 27967
Location & Maps
more
  • Sequence Map
    Chr8:72460489-72475233 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      14745 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 35.08 cM
  • Mapping Data
    5 experiments
Homology
more
  • Human Ortholog
    CHERP, calcium homeostasis endoplasmic reticulum protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHERP, calcium homeostasis endoplasmic reticulum protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DAN16, SCAF6, SRA1
  • Links
    NCBI Gene ID: 10523
    neXtProt AC: NX_Q8IWX8

  • Chr Location
    19p13.1; chr19:16517889-16542452 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 4656
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: CHERP
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    15
  • Chemically induced (other)
    1
  • Gene trapped
    13
  • Targeted
    1
  • Genomic Mutations
    1 involving Cherp
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052488 Ensembl Gene Model | MGI Sequence Detail 14745 C57BL/6J ±  kb
transcript ENSMUST00000079510 Ensembl | MGI Sequence Detail 3794 Not Applicable  
polypeptide ENSMUSP00000078469 Ensembl | MGI Sequence Detail 938 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    127 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-34111, MGI:1917769
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:227344 Crisci A, et al., Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Res. 2015 Dec 2;43(21):10456-73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory