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D11Wsu47e Gene Detail
Summary
  • Symbol
    D11Wsu47e
  • Name
    DNA segment, Chr 11, Wayne State University 47, expressed
  • Synonyms
    MGC:30773, MGC:57008
  • Feature Type
    protein coding gene
  • IDs
    MGI:106356
    NCBI Gene: 276852
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:113684412-113694647 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 79.15 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    517 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106356
protein coding gene Chr11:113684178-113699375 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019352
protein coding gene Chr11:117514854-117525091 (+)
A/J MGP_AJ_G0019321
protein coding gene Chr11:112452108-112462535 (+)
AKR/J MGP_AKRJ_G0019289
protein coding gene Chr11:115760666-115770900 (+)
BALB/cJ MGP_BALBcJ_G0019294
protein coding gene Chr11:112861084-112871320 (+)
C3H/HeJ MGP_C3HHeJ_G0019103
protein coding gene Chr11:116112392-116125700 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019745
protein coding gene Chr11:121039479-121049750 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017368
protein coding gene Chr11:109528542-109538926 (+)
CAST/EiJ MGP_CASTEiJ_G0018657
protein coding gene Chr11:117385341-117397022 (+)
CBA/J MGP_CBAJ_G0019073
protein coding gene Chr11:125971359-125981805 (+)
DBA/2J MGP_DBA2J_G0019185
protein coding gene Chr11:111888738-111898971 (+)
FVB/NJ MGP_FVBNJ_G0019176
protein coding gene Chr11:111367140-111377376 (+)
LP/J MGP_LPJ_G0019255
protein coding gene Chr11:117952841-117964707 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019207
protein coding gene Chr11:125122865-125133101 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019782
protein coding gene Chr11:116413856-116424091 (+)
PWK/PhJ MGP_PWKPhJ_G0018422
protein coding gene Chr11:113099960-113110591 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018214
protein coding gene Chr11:116223297-116233638 (+)
WSB/EiJ MGP_WSBEiJ_G0018709
protein coding gene Chr11:116374703-116385029 (+)



Homology
more
  • Human Ortholog
    C17orf80, chromosome 17 open reading frame 80
  • Vertebrate Orthologs
    7
  • Human Ortholog
    C17orf80, chromosome 17 open reading frame 80
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HLC-8, MIG3, SPEP1
  • Links
    NCBI Gene ID: 55028
    neXtProt AC: NX_Q9BSJ5
    UniProt: Q9BSJ5

  • Chr Location
    17q25.1; chr17:73232233-73248959 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041623 Ensembl Gene Model | MGI Sequence Detail 10236 C57BL/6J ±  kb
transcript ENSMUST00000042227 Ensembl | MGI Sequence Detail 2196 Not Applicable  
polypeptide ENSMUSP00000042025 Ensembl | MGI Sequence Detail 558 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR037694 Uncharacterized protein C17orf80
Molecular
Reagents
less
  • All nucleic 35
    cDNA 34
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-34048
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory