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Trim36 Gene Detail
Summary
  • Symbol
    Trim36
  • Name
    tripartite motif-containing 36
  • Synonyms
    D18Wsu100e, Haprin
  • Feature Type
    protein coding gene
  • IDs
    MGI:106264
    NCBI Gene: 28105
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:46165302-46212607 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 24.41 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    246 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106264
protein coding gene Chr18:46165300-46212607 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024404
protein coding gene Chr18:44952042-45001658 (-)
A/J MGP_AJ_G0024371
protein coding gene Chr18:43327816-43375131 (-)
AKR/J MGP_AKRJ_G0024340
protein coding gene Chr18:44524675-44571611 (-)
BALB/cJ MGP_BALBcJ_G0024371
protein coding gene Chr18:43444491-43490876 (-)
C3H/HeJ MGP_C3HHeJ_G0024138
protein coding gene Chr18:44605532-44657171 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024815
protein coding gene Chr18:46525879-46575135 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022250
protein coding gene Chr18:43176897-43225483 (-)
CAST/EiJ MGP_CASTEiJ_G0023612
protein coding gene Chr18:44568158-44621828 (-)
CBA/J MGP_CBAJ_G0024107
protein coding gene Chr18:47779479-47831647 (-)
DBA/2J MGP_DBA2J_G0024237
protein coding gene Chr18:42934073-43003569 (-)
FVB/NJ MGP_FVBNJ_G0024203
protein coding gene Chr18:42522693-42568026 (-)
LP/J MGP_LPJ_G0024321
protein coding gene Chr18:45000969-45052388 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024234
protein coding gene Chr18:49146739-49195741 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024862
protein coding gene Chr18:44433898-44484848 (-)
PWK/PhJ MGP_PWKPhJ_G0023356
protein coding gene Chr18:43086072-43134408 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023161
protein coding gene Chr18:44589802-44643788 (-)
WSB/EiJ MGP_WSBEiJ_G0023675
protein coding gene Chr18:44322246-44376369 (-)



Homology
more
  • Human Ortholog
    TRIM36, tripartite motif containing 36
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRIM36, tripartite motif containing 36
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ANPH, HAPRIN, RBCC728, RNF98
  • Links
    NCBI Gene ID: 55521
    neXtProt AC: NX_Q9NQ86
    UniProt: Q9NQ86

  • Chr Location
    5q22.3; chr5:115124762-115180546 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10275
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TRIM36
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human TRIM36 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033949 Ensembl Gene Model | MGI Sequence Detail 47306 C57BL/6J ±  kb
transcript ENSMUST00000037011 Ensembl | MGI Sequence Detail 4544 Not Applicable  
polypeptide ENSMUSP00000037978 Ensembl | MGI Sequence Detail 729 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 25
    cDNA 23
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-33956
References
more
  • Summaries
    All 37
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:228724 van Beuningen SF, et al., TRIM46 Controls Neuronal Polarity and Axon Specification by Driving the Formation of Parallel Microtubule Arrays. Neuron. 2015 Dec 16;88(6):1208-26

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory