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Pum3 Gene Detail
Summary
  • Symbol
    Pum3
  • Name
    pumilio RNA-binding family member 3
  • Synonyms
    1110069H02Rik, D19Bwg1357e
  • Feature Type
    protein coding gene
  • IDs
    MGI:106253
    NCBI Gene: 52874
  • Gene Overview
    MyGene.info: PUM3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:27388702-27429820 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 21.96 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    242 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106253
protein coding gene Chr19:27388698-27429908 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025009
protein coding gene Chr19:25755863-25792464 (-)
A/J MGP_AJ_G0024986
protein coding gene Chr19:24428334-24463632 (-)
AKR/J MGP_AKRJ_G0024954
protein coding gene Chr19:25349276-25384511 (-)
BALB/cJ MGP_BALBcJ_G0024985
protein coding gene Chr19:24467211-24503174 (-)
C3H/HeJ MGP_C3HHeJ_G0024741
protein coding gene Chr19:25308944-25347833 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025426
protein coding gene Chr19:26497490-26533788 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022845
protein coding gene Chr19:24444360-24479348 (-)
CAST/EiJ MGP_CASTEiJ_G0024211
protein coding gene Chr19:25086019-25121770 (-)
CBA/J MGP_CBAJ_G0024719
protein coding gene Chr19:27746831-27784643 (-)
DBA/2J MGP_DBA2J_G0024851
protein coding gene Chr19:24398801-24433923 (-)
FVB/NJ MGP_FVBNJ_G0024813
protein coding gene Chr19:24249220-24284388 (-)
LP/J MGP_LPJ_G0024936
protein coding gene Chr19:25737573-25778335 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024840
protein coding gene Chr19:27667256-27702581 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025481
protein coding gene Chr19:25345386-25387372 (-)
PWK/PhJ MGP_PWKPhJ_G0023959
protein coding gene Chr19:24039300-24074217 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023763
protein coding gene Chr19:24567417-24604075 (-)
WSB/EiJ MGP_WSBEiJ_G0024278
protein coding gene Chr19:25363592-25400771 (-)



Homology
more
  • Human Ortholog
    PUM3, pumilio RNA binding family member 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PUM3, pumilio RNA binding family member 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HA-8, HLA-HA8, KIAA0020, PEN, PUF6, PUF-A, XTP5
  • Links
    NCBI Gene ID: 9933
    neXtProt AC: NX_Q15397
    UniProt: Q15397

  • Chr Location
    9p24.2; chr9:2804152-2844130 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 5762
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PUM3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041360 Ensembl Gene Model | MGI Sequence Detail 41119 C57BL/6J ±  kb
transcript ENSMUST00000076219 Ensembl | MGI Sequence Detail 3462 Not Applicable  
polypeptide ENSMUSP00000075573 Ensembl | MGI Sequence Detail 648 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 195
    cDNA 194
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-33945, MGI:1916135, MGI:2147458
References
more
  • Summaries
    All 36
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory