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H2-Pa Pseudogene Detail
Summary
  • Symbol
    H2-Pa
  • Name
    histocompatibility 2, P region alpha locus
  • Feature Type
    pseudogene
  • IDs
    MGI:105314
    NCBI Gene: 15003
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:34303575-34304797 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 17.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_105314
 pseudogene Chr17:34303575-34304826 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040150
 pseudogene Chr17:34058905-34060056 (+)
A/J MGP_AJ_G0040143
 pseudogene Chr17:32876652-32877803 (+)
AKR/J MGP_AKRJ_G0040066
 pseudogene Chr17:33290975-33292126 (+)
BALB/cJ MGP_BALBcJ_G0040129
 pseudogene Chr17:33049871-33051025 (+)
C3H/HeJ MGP_C3HHeJ_G0039775
 pseudogene Chr17:33646783-33647934 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040719
 pseudogene Chr17:35358768-35359919 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037186
 pseudogene Chr17:30416810-30417921 (+)
CAST/EiJ MGP_CASTEiJ_G0038866
 pseudogene Chr17:33747141-33748295 (+)
CBA/J MGP_CBAJ_G0039741
 pseudogene Chr17:36754987-36756138 (+)
DBA/2J MGP_DBA2J_G0039939
 pseudogene Chr17:32260939-32262093 (+)
FVB/NJ MGP_FVBNJ_G0039900
 pseudogene Chr17:32128767-32129948 (+)
LP/J MGP_LPJ_G0039984
 pseudogene Chr17:34338249-34339400 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039888
 pseudogene Chr17:35802250-35803404 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040817
 pseudogene Chr17:33639858-33641039 (+)
PWK/PhJ MGP_PWKPhJ_G0038557
 pseudogene Chr17:31187960-31189141 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038261
 pseudogene Chr17:31586590-31587752 (+)
WSB/EiJ MGP_WSBEiJ_G0039090
 pseudogene Chr17:33650284-33651438 (+)



Homology
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Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098241 Ensembl Gene Model | MGI Sequence Detail 1223 C57BL/6J ±  kb
transcript ENSMUST00000182803 Ensembl | MGI Sequence Detail 697 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    Genomic 6
    Other 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-32355
References
more
  • Summaries
    All 8
  • Earliest
    J:31418 Arimura Y, et al., Structure of novel rat major histocompatibility complex class II genes RT1.Ha and Hb. Immunogenetics. 1995;41(5):320-5
  • Latest
    J:63110 Allcock RJ, et al., The mouse as a model for the effects of MHC genes on human disease. Immunol Today. 2000 Jul;21(7):328-32
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory