Rprl1 Gene Detail

Summary

• Symbol
  Rprl1
• Name
  ribonuclease P RNA-like 1
• Synonyms
  Rmrp2, RPRH2

• Feature Type
  RNase P RNA gene
  BioType Conflict
  
• IDs
  MGI:105105
  NCBI Gene: 19783
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:69303921-69304158 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.46 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation		Chr6:69303828-69304158 (-)
129S1/SvImJ	ENSMUSG00200014110	lncRNA gene	Chr6:66210420-66210657 (-)
129S1/SvImJ	ENSMUSG00200014099	ribozyme gene	Chr6:66210327-66210653 (-)
A/J	ENSMUSG00195043999	lncRNA gene	Chr6:65963349-65963586 (-)
A/J	ENSMUSG00195043974	ribozyme gene	Chr6:65963256-65963582 (-)
AKR/J	ENSMUSG00220044034	ribozyme gene	Chr6:65206215-65206442 (-)
AKR/J	ENSMUSG00220044058	lncRNA gene	Chr6:65206290-65206448 (-)
BALB/cJ	ENSMUSG00180043113	ribozyme gene	Chr6:66319117-66319443 (-)
BALB/cJ	ENSMUSG00180043150	lncRNA gene	Chr6:66319210-66319447 (-)
C3H/HeJ	ENSMUSG00175014189	ribozyme gene	Chr6:111130864-111131190 (+)
C3H/HeJ	ENSMUSG00175014213	lncRNA gene	Chr6:111130860-111131097 (+)
C57BL/6NJ	ENSMUSG00215044706	lncRNA gene	Chr6:66293759-66293996 (-)
C57BL/6NJ	ENSMUSG00215044688	ribozyme gene	Chr6:66293666-66293992 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005037	lincRNA gene	Chr14:42761988-42762225 (-)
CAST/EiJ	ENSTCUG00005038025	ribozyme gene	Chr6:66619102-66619429 (-)
CAST/EiJ	ENSTCUG00005038049	lncRNA gene	Chr6:66619196-66619433 (-)
CBA/J	ENSMUSG00210040160	ribozyme gene	Chr6:66116489-66116815 (-)
CBA/J	ENSMUSG00210040225	lncRNA gene	Chr6:66116582-66116819 (-)
DBA/2J	ENSMUSG00185045643	lncRNA gene	Chr6:66681805-66682042 (-)
DBA/2J	ENSMUSG00185045606	ribozyme gene	Chr6:66681712-66682038 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000042578	ribozyme gene	Chr6:65763469-65763796 (-)
JF1/MsJ	ENSUMUG00000042611	lncRNA gene	Chr6:65763563-65763800 (-)
LP/J	ENSMUSG00230030016	lncRNA gene	Chr6:67802120-67802357 (-)
LP/J	ENSMUSG00230028606	ribozyme gene	Chr6:67802027-67802353 (-)
NOD/ShiLtJ	ENSMUSG00190042260	lncRNA gene	Chr6:65704408-65704645 (-)
NOD/ShiLtJ	ENSMUSG00190042221	ribozyme gene	Chr6:65704314-65704641 (-)
NZO/HlLtJ	ENSMUSG00225021124	lncRNA gene	Chr6:69770439-69770676 (-)
NZO/HlLtJ	ENSMUSG00225020311	ribozyme gene	Chr6:69770346-69770672 (-)
PWK/PhJ	ENSLUMG00010021623	ribozyme gene	Chr6:65165758-65166085 (-)
PWK/PhJ	ENSLUMG00010021633	lncRNA gene	Chr6:65165852-65166089 (-)
SPRET/EiJ	ENSMSPG00010030996	ribozyme gene	Chr6:67269837-67270163 (-)
SPRET/EiJ	ENSMSPG00010031051	lncRNA gene	Chr6:67269930-67270167 (-)
WSB/EiJ	ENSIUOG00005024264	lncRNA gene	Chr6:67042921-67043158 (-)
WSB/EiJ	ENSIUOG00005024249	ribozyme gene	Chr6:67042828-67043154 (-)

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2

• Ensembl
  ENSMUSG00000088675 (Evidence), ENSMUSG00000106222 (Evidence)
• NCBI Gene
  19783

Representative Sequences			Length	Strain/Species
genomic	19783	NCBI Gene Model | MGI Sequence Detail	238	C57BL/6J
transcript	NR_004434	RefSeq | MGI Sequence Detail	238	C57BL/6

Molecular
Reagents

• All nucleic 1

  Genomic 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGD-MRK-32145

References

• Summaries
  All 7
• Earliest
  J:29462 Li K, et al., Cloning and characterization of three new murine genes encoding short homologues of RNase P RNA. J Biol Chem. 1995 Oct 20;270(42):25281-5