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Clcn2 Gene Detail
Summary
  • Symbol
    Clcn2
  • Name
    chloride channel, voltage-sensitive 2
  • Synonyms
    Clc2, ClC-2, nmf240
  • Feature Type
    protein coding gene
  • IDs
    MGI:105061
    NCBI Gene: 12724
  • Gene Overview
    MyGene.info: CLCN2
Location & Maps
more
  • Sequence Map
    Chr16:20702964-20717746 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      14783 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 12.50 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CLCN2, chloride voltage-gated channel 2
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CLCN2, chloride voltage-gated channel 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CIC-2, clC-2, CLC2, ECA2, ECA3, EGI11, EGI3, EGMA, EJM6, EJM8, LKPAT
  • Links
    NCBI Gene ID: 1181
    neXtProt AC: NX_P51788

  • Chr Location
    3q27.1; chr3:184346185-184361651 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 3213
    1 human;1 mouse;2 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CLCN2
  • Gene Tree
Human Diseases
more
  • Diseases
    2 with human CLCN2 associations

Human Disease Mouse Models
       Epilepsy, Idiopathic Generalized, Susceptibility to, 11; EIG11   OMIM: 607628
Leukoencephalopathy with Ataxia; LKPAT   OMIM: 615651
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    48 phenotypes from 4 alleles in 3 genetic backgrounds
    2 phenotypes from multigenic genotypes
    2 images
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    11
  • Chemically induced (ENU)
    1
  • Gene trapped
    4
  • Targeted
    6
  • Incidental Mutations
Mice homozygous for a null allele exhibit abnormal brain morphology, male infertility, and abnormal eye morphology.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028531 VEGA Gene Model | MGI Sequence Detail 14783 C57BL/6J ±  kb
transcript OTTMUST00000070706 VEGA | MGI Sequence Detail 3128 Not Applicable  
polypeptide OTTMUSP00000036072 VEGA | MGI Sequence Detail 908 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    77 from dbSNP Build 142
  • RFLP
Protein
Information
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Molecular
Reagents
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  • All nucleic 44
    cDNA 43
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
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MGD-MRK-32100, MGI:3034882, MGI:3056296
References
more
  • Summaries
    All 59
    Developmental Gene Expression 8
    Gene Ontology 6
    Phenotypes 26
  • Earliest
    J:29529 Lengeling A, et al., Chloride channel 2 gene (Clc2) maps to chromosome 16 of the mouse, extending a region of conserved synteny with human chromosome 3q. Genet Res. 1995 Oct;66(2):175-8
  • Latest
    J:232973 Hirst CS, et al., Ion channel expression in the developing enteric nervous system. PLoS One. 2015;10(3):e0123436

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory