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Nup88
Gene Detail
 Symbol
Name
ID
Nup88
nucleoporin 88
MGI:104900
Synonyms Nup84, Prei2
Feature Type protein coding gene
Genetic Map
Chromosome 11
43.21 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:70943058-70969973 bp, - strand
From VEGA annotation of GRCm38

  26916 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1901  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Nup88

Human
homologs
Human Homolog NUP88, nucleoporin 88kDa
NCBI Gene ID 4927
neXtProt AC  NX_Q99567
Human Chr (Location)  17p13.2; chr17:5386026-5419739 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(30) : Gene trapped(28) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Nup88 interacts with 307 markers (Mir1b, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process ion transport, mRNA transport, ...
Component integral component of membrane, nuclear pore, ...
Function porin activity
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (32)    Tissues (32)    Images (4)
Theiler Stages: 1, 3, 4, 15, 19, 21, 22, 28
Assay TypeResults
RNA in situ 25
RT-PCR 7
cDNA source data(180)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(187) Genomic(2) cDNA(183) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000006081 (Evidence)
Ensembl Gene ModelENSMUSG00000040667 (Evidence)
Entrez Gene19069 (Evidence)
UniGene288962
DFCITC1573460, TC1586208, TC1590234, TC1592027, TC1602935, TC1612481
NIA Mouse Gene IndexU033011
Consensus CDS ProjectCCDS36206.1, CCDS36207.1, CCDS70233.1
International Mouse Knockout Project StatusNup88
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006081 VEGA Gene Model | MGI Sequence Detail 26916 C57BL/6J ±  kb
transcript OTTMUST00000013737 VEGA | MGI Sequence Detail 2450 Not Applicable 
polypeptide OTTMUSP00000006374 VEGA | MGI Sequence Detail 753 Not Applicable 

For the selected sequences
All sequences(74) RefSeq(7) UniProt(6)
Polymorphisms SNPs within 2kb(172 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019321 Nucleoporin Nup88
Protein Ontology PR:000011524 nuclear pore complex protein Nup88
References (Earliest) J:16710 Temeles GL, et al., Expression patterns of novel genes during mouse preimplantation embryogenesis. Mol Reprod Dev. 1994 Feb;37(2):121-9
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGD-MRK-29053

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory