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Gpcpd1 Gene Detail
Summary
  • Symbol
    Gpcpd1
  • Name
    glycerophosphocholine phosphodiesterase 1
  • Synonyms
    2310004G06Rik, 2310032D16Rik, mKIAA1434, Prei4
  • Feature Type
    protein coding gene
  • IDs
    MGI:104898
    NCBI Gene: 74182
Location & Maps
more
  • Sequence Map
    Chr2:132529082-132587729 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      58648 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 64.57 cM, cytoband F3
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    GPCPD1, glycerophosphocholine phosphodiesterase 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GPCPD1, glycerophosphocholine phosphodiesterase 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    EDI3, GDE5, GDPD6, PREI4
  • Links
    NCBI Gene ID: 56261
    neXtProt AC: NX_Q9NPB8

  • Chr Location
    20p12.3; chr20:5544434-5611026 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    1
  • Gene trapped
    8
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Gpcpd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015660 VEGA Gene Model | MGI Sequence Detail 58648 C57BL/6J ±  kb
transcript OTTMUST00000037199 VEGA | MGI Sequence Detail 3686 Not Applicable  
polypeptide OTTMUSP00000016668 VEGA | MGI Sequence Detail 675 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    249 from dbSNP Build 142
Protein
Information
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  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000031695 glycerophosphocholine phosphodiesterase GPCPD1
  • EC
  • InterPro Domains
    IPR013784 Carbohydrate-binding-like fold
    IPR002044 Carbohydrate binding module family 20
    IPR030395 Glycerophosphodiester phosphodiesterase domain
    IPR013783 Immunoglobulin-like fold
    IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Molecular
Reagents
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  • All nucleic 26
    cDNA 23
    Primer pair 2
    Other 1

    Microarray probesets 6
Other
Accession IDs
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MGD-MRK-29051, MGI:1916759, MGI:1921432
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:16710 Temeles GL, et al., Expression patterns of novel genes during mouse preimplantation embryogenesis. Mol Reprod Dev. 1994 Feb;37(2):121-9
  • Latest
    J:219311 Corda D, et al., The emerging physiological roles of the glycerophosphodiesterase family. FEBS J. 2014 Feb;281(4):998-1016

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory