Spata13
Gene Detail

Symbol Name ID

Spata13 spermatogenesis associated 13 MGI:104838

Synonyms

ESTM11, mKIAA1112

Feature Type

protein coding gene

Genetic Map

Chromosome 14

31.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr14:60634001-60764549 bp, + strand From VEGA annotation of GRCm38   130549 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:19482  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Spata13

Human homologs

Human Homolog		SPATA13, spermatogenesis associated 13
NCBI Gene ID		221178
neXtProt AC		NX_Q96N96
Human Synonyms		ARHGEF29, ASEF2
Human Chr (Location)		13q12.12; chr13:24734861-24881212 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(30) : Targeted(2) Gene trapped(28)

Gene Ontology (GO) classifications

All GO classifications: (18 annotations)

Process	cell migration, filopodium assembly, ...
Component	cell projection, cytoplasm, ...
Function	guanyl-nucleotide exchange factor activity, phospholipid binding, ...

External Resources: FuncBase

Expression

Literature Summary: (6 records)
Data Summary: Results (102)    Tissues (48)    Images (30)
Theiler Stages: 17, 19, 20, 21, 22, 23, 24, 25, 28

Assay Type	Results
RNA in situ	96
Northern blot	6

cDNA source data(108)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(108) cDNA(108)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000035020 (Evidence)
Ensembl Gene Model	ENSMUSG00000021990 (Evidence)
Entrez Gene	219140 (Evidence)
UniGene	149776
DFCI	TC1598382, TC1607349, TC1635291, TC1670445, TC1674250
DoTS	DT.101132358, DT.101281898, DT.101386325, DT.101736758, DT.110774162, DT.91286525, DT.97400694
NIA Mouse Gene Index	U015719
Consensus CDS Project	CCDS49516.1
International Mouse Knockout Project Status	Spata13

Sequences

Length	Strain/Species
genomic	OTTMUSG00000035020	VEGA Gene Model | MGI Sequence Detail	130549	C57BL/6J
transcript	OTTMUST00000089047	VEGA | MGI Sequence Detail	7467	Not Applicable
polypeptide	OTTMUSP00000048609	VEGA | MGI Sequence Detail	1244	Not Applicable

All sequences(89) RefSeq(3) UniProt(9)

Polymorphisms

RFLP(1) : SNPs(482 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR000219	Dbl homology (DH) domain
InterPro	IPR001331	Guanine-nucleotide dissociation stimulator, CDC24, conserved site
InterPro	IPR001849	Pleckstrin homology domain
InterPro	IPR011993	Pleckstrin homology-like domain
InterPro	IPR001452	Src homology-3 domain
Protein Ontology	PR:000015480	spermatogenesis-associated protein 13

References

(Earliest) J:28401 Bettenhausen B, et al., Efficient isolation of novel mouse genes differentially expressed in early postimplantation embryos. Genomics. 1995 Aug 10;28(3):436-41
(Latest) J:174459 Boyle MP, et al., Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala. J Comp Neurol. 2011 Aug 1;519(11):2061-89
All references(44)

Other accession IDs

MGD-MRK-28132, MGI:1353612