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Hnrnpa1
Gene Detail
Symbol

Name
ID
Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
MGI:104820
Synonyms
D15Ertd119e, Hdp, hnrnp-A, Hnrpa1
Feature Type
protein coding gene
Genetic Map
Chromosome 15
58.58 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:103240432-103244955 bp, + strand
From Ensembl annotation of GRCm38

  4524 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134628  Vertebrate Homology Class
1 mouse; 1 chimpanzee; 1 chicken

Gene Tree: Hnrnpa1

Mutations,
alleles, and
phenotypes
All mutations/alleles(36) : Gene trapped(34) Targeted(2)
Incidental mutations (data from APF )
Interactions
Hnrnpa1 interacts with 196 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process alternative mRNA splicing, via spliceosome, mRNA processing, ...
Component cytoplasm, nucleoplasm, ...
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (68)    Tissues (33)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 52
Western blot 12
RT-PCR 4
cDNA source data(34)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(40) Genomic(2) cDNA(34) Primer pair(3) Other(1)
Microarray probesets(8)
Other database
links
Ensembl Gene ModelENSMUSG00000046434 (Evidence)
Entrez Gene15382 (Evidence)
NIA Mouse Gene IndexU106741, U077988, U036035, U035650, U016738, U031477, U018500, U129911, U138169
Consensus CDS ProjectCCDS37232.1, CCDS37233.1
International Mouse Knockout Project StatusHnrnpa1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046434 Ensembl Gene Model | MGI Sequence Detail 4524 C57BL/6J ±  kb
transcript ENSMUST00000036004 Ensembl | MGI Sequence Detail 1918 Not Applicable 
polypeptide ENSMUSP00000042658 Ensembl | MGI Sequence Detail 373 Not Applicable 

For the selected sequences
All sequences(72) RefSeq(6) UniProt(11)
Polymorphisms
SNPs within 2kb(24 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021662 Nuclear factor hnRNPA1
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
Protein Ontology PR:000008658 heterogeneous nuclear ribonucleoprotein A1
References
(Earliest) J:1572 Varmuza S, et al., Isolation of epiblast-specific cDNA clones by differential hybridization with polymerase chain reaction-amplified probes derived from single embryos. Mol Reprod Dev. 1992 Aug;32(4):339-48
(Latest) J:197742 Pedrotti S, et al., The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator. Nucleic Acids Res. 2012 Feb;40(3):1021-32
All references(50)
Other
accession IDs
MGD-MRK-26049, MGD-MRK-28114, MGI:104612, MGI:1261777

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory