About   Help   FAQ
Hnrnpa1
Gene Detail
 Symbol
Name
ID
Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
MGI:104820
Synonyms D15Ertd119e, Hdp, hnrnp-A, Hnrpa1
Feature Type protein coding gene
Genetic Map
Chromosome 15
58.58 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:103240432-103244955 bp, + strand
From NCBI annotation of GRCm38

  4524 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:88614  Vertebrate Homology Class
1 human; 1 mouse; 3 chimpanzee; 1 rhesus macaque; 1 chicken; 2 zebrafish

Gene Tree: Hnrnpa1

Human
homologs
Human Homolog HNRNPA1, heterogeneous nuclear ribonucleoprotein A1
NCBI Gene ID 3178
neXtProt AC  NX_P09651
Human Synonyms  ALS19, ALS20, hnRNP A1, hnRNP-A1, HNRPA1, HNRPA1L3, IBMPFD3
Human Chr (Location)  12q13.1; chr12:54280696-54287087 (+)  GRCh38
Disease Associations  (2) Diseases Associated with Human HNRNPA1
Alleles
and
phenotypes
All alleles(36) : Targeted(2) Gene trapped(34)
Gene Ontology
(GO)
classifications
All GO classifications: (23 annotations)
Process alternative mRNA splicing, via spliceosome, mRNA processing, ...
Component catalytic step 2 spliceosome, cytoplasm, ...
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (68)    Tissues (30)    Images (15)
Theiler Stages: 21, 22, 24, 26, 28
Assay TypeResults
RNA in situ 52
Western blot 12
RT-PCR 4
cDNA source data(34)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(40) Genomic(2) cDNA(34) Primer pair(3) Other(1)
Microarray probesets(8)
Other database
links
Ensembl Gene ModelENSMUSG00000046434 (Evidence)
Entrez Gene15382 (Evidence)
NIA Mouse Gene IndexU016738, U018500, U031477, U035650, U036035, U077988, U106741, U129911, U138169
Consensus CDS ProjectCCDS37232.1, CCDS37233.1
International Mouse Knockout Project StatusHnrnpa1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 15382 NCBI Gene Model | MGI Sequence Detail 4524 C57BL/6J ±  kb
transcript NM_001039129 RefSeq | MGI Sequence Detail 1975 C57BL/6 
polypeptide P49312 UniProt | EBI | MGI Sequence Detail 320 Not Applicable 

For the selected sequences
All sequences(67) RefSeq(6) UniProt(6)
Polymorphisms SNPs within 2kb(24 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021662 Nuclear factor hnRNPA1
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
Protein Ontology PR:000008658 heterogeneous nuclear ribonucleoprotein A1
Graphical View of Protein Domain Structure
References (Earliest) J:1572 Varmuza S, et al., Isolation of epiblast-specific cDNA clones by differential hybridization with polymerase chain reaction-amplified probes derived from single embryos. Mol Reprod Dev. 1992 Aug;32(4):339-48
(Latest) J:197742 Pedrotti S, et al., The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator. Nucleic Acids Res. 2012 Feb;40(3):1021-32
All references(51)
Other
accession IDs
MGD-MRK-26049, MGD-MRK-28114, MGI:104612, MGI:1261777

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory