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Gt(ROSA)26Sor Gene Detail
Summary
  • Symbol
    Gt(ROSA)26Sor
  • Name
    gene trap ROSA 26, Philippe Soriano
  • Synonyms
    beta geo, Gtrgeo26, Gtrosa26, R26, ROSA26, Thumpd3as1
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:104735
    NCBI Gene: 14910
Location & Maps
more
  • Sequence Map
    Chr6:113067428-113077333 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      9906 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 52.73 cM
  • Mapping Data
    5 experiments
Homology
more
  • Human Ortholog
    THUMPD3-AS1, THUMPD3 antisense RNA 1
  • Human Ortholog
    THUMPD3-AS1, THUMPD3 antisense RNA 1
    Orthology source: HGNC
  • Synonyms
    SETD5-AS1
  • Links
    NCBI Gene ID: 440944

  • Chr Location
    3p25.3; chr3:9388853-9397490 (-)  GRCh38.p2

Human Diseases
less
  • Mutations/Alleles
    28 with disease annotations
  • References
    44 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1694 phenotypes from multigenic genotypes
    64 images
    5465 phenotype references
  • All Mutations and Alleles
    820
  • Endonuclease-mediated
    4
  • Gene trapped
    185
  • Spontaneous
    1
  • Targeted
    630
  • Genomic Mutations
    1 involving Gt(ROSA)26Sor
Mice homozygous for the original gene trap insertion and a targeted mutation mimicking the original gene trap exhibit no abnormal phenotype.
Gene Ontology
(GO)
Classifications
less
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034748 VEGA Gene Model | MGI Sequence Detail 9906 C57BL/6J ±  kb
transcript NR_027008 RefSeq | MGI Sequence Detail 1230 C57BL/6  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    59 from dbSNP Build 142
  • RFLP
Molecular
Reagents
less
  • All nucleic 44
    Genomic 3
    cDNA 41

    Microarray probesets 2
Other
Accession IDs
less
MGD-MRK-27098, MGI:2141626
References
more
  • Summaries
    All 5501
    Developmental Gene Expression 11
    Diseases 44
    Phenotypes 5465
  • Earliest
    J:14451 LaRosa GJ, et al., An early effect of retinoic acid: cloning of an mRNA (Era-1) exhibiting rapid and protein synthesis-independent induction during teratocarcinoma stem cell differentiation. Proc Natl Acad Sci U S A. 1988 Jan;85(2):329-33
  • Latest
    J:231833 Hashimoto R, et al., Origins of oligodendrocytes in the cerebellum, whose development is controlled by the transcription factor, Sox9. Mech Dev. 2016 May;140:25-40

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory