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Gt(ROSA)26Sor
Gene Detail
Symbol

Name
ID
Gt(ROSA)26Sor
gene trap ROSA 26, Philippe Soriano
MGI:104735
Synonyms
beta geo, Gtrgeo26, Gtrosa26, R26, ROSA26
Feature Type
unclassified non-coding RNA gene
Genetic Map
Chromosome 6
52.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr6:113067428-113077333 bp, - strand
From VEGA annotation of GRCm38

  9906 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HCOP human homology predictions: THUMPD3-AS1
Gene Tree: Gt(ROSA)26Sor
Human
homologs
THUMPD3-AS1, THUMPD3 antisense RNA 1
Orthology source: HGNC

IDs:
NCBI Gene ID: 440944

Human Synonyms: SETD5-AS1

Human Chr (Location): 3p25.3; chr3:9388853-9397490 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(760) : Endonuclease-mediated(1) Gene trapped(185) Spontaneous(1) Targeted(573)
Genomic Mutations involving Gt(ROSA)26Sor (1)
 
Mice homozygous for the original gene trap insertion and a targeted mutation mimicking the original gene trap exhibit no abnormal phenotype.
 
Mutations Annotated to Human Diseases (24)    Phenotype Images(42)
Expression
Literature Summary: (11 records)
Data Summary: Results (4)    Tissues (4)    Tissue x Stage Matrix (view)
Assay TypeResults
In situ reporter (knock in) 4
cDNA source data(40)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(44) Genomic(3) cDNA(41)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000034748 (Evidence)
Ensembl Gene Model ENSMUSG00000086429 (Evidence)
Entrez Gene 14910 (Evidence)
UniGene 280950
DFCI TC1649911, TC1603235, TC1771202
DoTS DT.491815, DT.101362999
NIA Mouse Gene Index U027721
International Mouse Phenotyping Consortium Status Gt(ROSA)26Sor
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034748 VEGA Gene Model | MGI Sequence Detail 9906 C57BL/6J ±  kb
transcript NR_027008 RefSeq | MGI Sequence Detail 1230 C57BL/6 

For the selected sequences
All sequences(27) RefSeq(3)
Polymorphisms
RFLP(1) : SNPs within 2kb(59 from dbSNP Build 137)
References
(Earliest) J:14451 LaRosa GJ, et al., An early effect of retinoic acid: cloning of an mRNA (Era-1) exhibiting rapid and protein synthesis-independent induction during teratocarcinoma stem cell differentiation. Proc Natl Acad Sci U S A. 1988 Jan;85(2):329-33
(Latest) J:222392 Liu G, et al., Selective expression of Parkinson's disease-related Leucine-rich repeat kinase 2 G2019S missense mutation in midbrain dopaminergic neurons impairs dopamine release and dopaminergic gene expression. Hum Mol Genet. 2015 Jun 29;
All references(4798)
Disease annotation references (4)
Other
accession IDs
MGD-MRK-27098, MGI:2141626

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory