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Gt(ROSA)26Sor Gene Detail
Summary
  • Symbol
    Gt(ROSA)26Sor
  • Name
    gene trap ROSA 26, Philippe Soriano
  • Synonyms
    beta geo, Gtrgeo26, Gtrosa26, R26, ROSA26, Thumpd3as1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:104735
    NCBI Gene: 14910
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:113067428-113077244 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 52.73 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104735
lncRNA gene Chr6:113067428-113077333 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004335
antisense lncRNA gene Chr6:115548703-115560361 (-)
A/J MGP_AJ_G0004312
antisense lncRNA gene Chr6:111139399-111149261 (-)
AKR/J MGP_AKRJ_G0004295
antisense lncRNA gene Chr6:114128614-114138515 (-)
BALB/cJ MGP_BALBcJ_G0004298
antisense lncRNA gene Chr6:111086531-111096539 (-)
C3H/HeJ MGP_C3HHeJ_G0004206
antisense lncRNA gene Chr6:70161689-70172315 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004448
antisense lncRNA gene Chr6:118559794-118569728 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003916
antisense lncRNA gene Chr6:108147135-108157094 (-)
CAST/EiJ MGP_CASTEiJ_G0004209
antisense lncRNA gene Chr6:114550254-114560159 (-)
CBA/J MGP_CBAJ_G0004241
antisense lncRNA gene Chr6:123240581-123250541 (-)
DBA/2J MGP_DBA2J_G0004256
antisense lncRNA gene Chr6:110225220-110235260 (-)
FVB/NJ MGP_FVBNJ_G0004273
antisense lncRNA gene Chr6:109216346-109226211 (-)
LP/J MGP_LPJ_G0004336
antisense lncRNA gene Chr6:115605897-115616153 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004264
antisense lncRNA gene Chr6:127523028-127532908 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004445
antisense lncRNA gene Chr6:114141999-114152826 (-)
PWK/PhJ MGP_PWKPhJ_G0004162
antisense lncRNA gene Chr6:109169048-109178894 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004105
antisense lncRNA gene Chr6:112959592-112970006 (-)
WSB/EiJ MGP_WSBEiJ_G0004246
antisense lncRNA gene Chr6:114509521-114520912 (-)



Homology
more
  • Human Ortholog
    THUMPD3-AS1, THUMPD3 antisense RNA 1
  • Human Ortholog
    THUMPD3-AS1, THUMPD3 antisense RNA 1
    Orthology source: HGNC
  • Synonyms
    SETD5-AS1
  • Links
    NCBI Gene ID: 440944

  • Chr Location
    3p25.3; chr3:9385264-9397494 (-)  GRCh38.p7

Human Diseases
less
  • Mutations/Alleles
    59 with disease annotations
  • References
    74 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1928 phenotypes from multigenic genotypes
    89 images
    9496 phenotype references
  • All Mutations and Alleles
    989
  • Endonuclease-mediated
    8
  • Gene trapped
    185
  • Spontaneous
    1
  • Targeted
    792
  • Transgenic
    3
  • Genomic Mutations
    1 involving Gt(ROSA)26Sor
  • Find Mice (IMSR)
  • Recombinase Activity
Mice homozygous for the original gene trap insertion and a targeted mutation mimicking the original gene trap exhibit no abnormal phenotype.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 14910 NCBI Gene Model | MGI Sequence Detail 9817 C57BL/6J ±  kb
transcript NR_027008 RefSeq | MGI Sequence Detail 1230 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 46
    Genomic 3
    cDNA 43

    Microarray probesets 2
Other
Accession IDs
less
MGD-MRK-27098, MGI:2141626
References
more
  • Summaries
    All 9551
    Developmental Gene Expression 14
    Diseases 74
    Phenotypes 9496
  • Earliest
    J:12736 Hayasaka I, et al., Polydactyly Nagoya, Pdn: A new mutant gene in the mouse. Jikken Dobutsu. 1980 Oct;29(4):391-5
  • Latest
    J:277669 Wang T, et al., Smc3 is required for mouse embryonic and adult hematopoiesis. Exp Hematol. 2019 Feb;70:70-84.e6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory