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Ccr1l1 Gene Detail
Summary
  • Symbol
    Ccr1l1
  • Name
    chemokine (C-C motif) receptor 1-like 1
  • Synonyms
    Cmkbr1l1, MIP-1 alphaRL1
  • Feature Type
    protein coding gene
  • IDs
    MGI:104617
    NCBI Gene: 12770
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:123977243-123978408 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 75.05 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104617
protein coding gene Chr9:123976949-123978408 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035490
protein coding gene Chr9:127083885-127085344 (-)
A/J MGP_AJ_G0035468
protein coding gene Chr9:122187929-122189388 (-)
AKR/J MGP_AKRJ_G0035401
protein coding gene Chr9:125460104-125461563 (-)
BALB/cJ MGP_BALBcJ_G0035464
protein coding gene Chr9:122112018-122113477 (-)
C3H/HeJ MGP_C3HHeJ_G0035171
protein coding gene Chr9:125906141-125907600 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035987
protein coding gene Chr9:130548627-130550086 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032869
protein coding gene Chr9:119244621-119246085 (-)
CAST/EiJ MGP_CASTEiJ_G0034476
protein coding gene Chr9:125907071-125908530 (-)
CBA/J MGP_CBAJ_G0035139
protein coding gene Chr9:135344821-135346280 (-)
DBA/2J MGP_DBA2J_G0035298
protein coding gene Chr9:121669449-121670908 (-)
FVB/NJ MGP_FVBNJ_G0035245
protein coding gene Chr9:120529486-120530945 (-)
LP/J MGP_LPJ_G0035377
protein coding gene Chr9:127447753-127449212 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035286
protein coding gene Chr9:136136836-136138295 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036006
protein coding gene Chr9:125925766-125927225 (-)
PWK/PhJ MGP_PWKPhJ_G0034180
protein coding gene Chr9:122074850-122076309 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034017
protein coding gene Chr9:125987948-125989407 (-)
WSB/EiJ MGP_WSBEiJ_G0034596
protein coding gene Chr9:125724426-125725885 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype reference
Mice homozygous for a targeted null mutation do not exhibit any significant abnormalities compared to controls.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064039 Ensembl Gene Model | MGI Sequence Detail 1166 C57BL/6J ±  kb
transcript ENSMUST00000071404 Ensembl | MGI Sequence Detail 1166 Not Applicable  
polypeptide ENSMUSP00000071353 Ensembl | MGI Sequence Detail 356 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    Genomic 1
    cDNA 6
    Primer pair 1
    Other 2

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-26054
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:27219 Gao JL, et al., Cloning and differential tissue-specific expression of three mouse beta chemokine receptor-like genes, including the gene for a functional macrophage inflammatory protein-1 alpha receptor. J Biol Chem. 1995 Jul 21;270(29):17494-501
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory