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Cox6c Gene Detail
Summary
  • Symbol
    Cox6c
  • Name
    cytochrome c oxidase subunit 6C
  • Feature Type
    protein coding gene
  • IDs
    MGI:104614
    NCBI Gene: 12864
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:35932122-35938392 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 14.46 cM, cytoband B3.3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    256 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104614
 protein coding gene Chr15:35926032-35938392 (-)
129S1/SvImJ ENSMUSG00200026688
 protein coding gene Chr15:32944449-32956800 (-)
A/J ENSMUSG00195033119
 protein coding gene Chr15:32863785-32876145 (-)
AKR/J ENSMUSG00220027868
 protein coding gene Chr15:32777726-32790084 (-)
BALB/cJ ENSMUSG00180031527
 protein coding gene Chr15:32825976-32838330 (-)
C3H/HeJ ENSMUSG00175025076
 protein coding gene Chr15:33030431-33042786 (-)
C57BL/6NJ ENSMUSG00215011528
 protein coding gene Chr15:32838285-32850645 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019732
 protein coding gene Chr15:30847916-30863378 (-)
CAST/EiJ ENSTCUG00005010113
 protein coding gene Chr15:32861406-32873854 (-)
CBA/J ENSMUSG00210017894
 protein coding gene Chr15:32940921-32953277 (-)
DBA/2J ENSMUSG00185033944
 protein coding gene Chr15:32925732-32938087 (-)
FVB/NJ ENSMUSG00205020260
 protein coding gene Chr15:32835248-32847610 (-)
JF1/MsJ ENSUMUG00000020735
 protein coding gene Chr15:32819901-32832253 (-)
LP/J ENSMUSG00230010571
 protein coding gene Chr15:36325790-36338141 (-)
NOD/ShiLtJ ENSMUSG00190029571
 protein coding gene Chr15:32906269-32918630 (-)
NZO/HlLtJ ENSMUSG00225031319
 protein coding gene Chr15:36617144-36629499 (-)
PWK/PhJ ENSLUMG00010029112
 protein coding gene Chr15:32994082-33006451 (-)
SPRET/EiJ ENSMSPG00010012180
 protein coding gene Chr15:33632770-33635746 (-)
WSB/EiJ ENSIUOG00005031143
 protein coding gene Chr15:32952075-32964419 (-)



Homology
more
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Links
    NCBI Gene ID: 1345
    UniProt: P09669

  • Chr Location
    8q22.2; chr8:99873200-99893759 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
  • All Mutations and Alleles
    36
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    4
  • Gene trapped
    28
  • Targeted
    2
  • Genomic Mutations
    2 involving Cox6c
  • Find Mice (IMSR)
    10 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    11
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    693
  • Tissues
    95
  • cDNA Data
    10
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12864 NCBI Gene Model | MGI Sequence Detail 6271 C57BL/6J ±  kb
transcript NM_053071 RefSeq | MGI Sequence Detail 527 C57BL/6  
polypeptide Q9CPQ1 UniProt | EBI | MGI Sequence Detail 76 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 10
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-26051
References
more
  • Summaries
    All 49
    Developmental Gene Expression 3
    Gene Ontology 11
    Phenotypes 14
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:355679 Vercellino I, et al., SCAF1 drives the compositional diversity of mammalian respirasomes. Nat Struct Mol Biol. 2024 Jul;31(7):1061-1071
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory