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Rcn1 Gene Detail
Summary
  • Symbol
    Rcn1
  • Name
    reticulocalbin 1
  • Synonyms
    Rcn
  • Feature Type
    protein coding gene
  • IDs
    MGI:104559
    NCBI Gene: 19672
  • Gene Overview
    MyGene.info: RCN1
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:105386291-105399319 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 55.18 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    138 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104559
 protein coding gene Chr2:105385948-105399319 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026229
 protein coding gene Chr2:107545719-107558747 (-)
A/J MGP_AJ_G0026190
 protein coding gene Chr2:103061702-103074898 (-)
AKR/J MGP_AKRJ_G0026170
 protein coding gene Chr2:105871593-105884782 (-)
BALB/cJ MGP_BALBcJ_G0026199
 protein coding gene Chr2:103338736-103351875 (-)
C3H/HeJ MGP_C3HHeJ_G0025949
 protein coding gene Chr2:106181969-106195017 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026650
 protein coding gene Chr2:111074301-111087329 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024036
 protein coding gene Chr2:98855319-98870203 (-)
CAST/EiJ MGP_CASTEiJ_G0025414
 protein coding gene Chr2:106710166-106723188 (-)
CBA/J MGP_CBAJ_G0025927
 protein coding gene Chr2:114904425-114920197 (-)
DBA/2J MGP_DBA2J_G0026065
 protein coding gene Chr2:102602823-102616027 (-)
FVB/NJ MGP_FVBNJ_G0026028
 protein coding gene Chr2:101583606-101596633 (-)
LP/J MGP_LPJ_G0026168
 protein coding gene Chr2:107668537-107681767 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026052
 protein coding gene Chr2:118748455-118761483 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026704
 protein coding gene Chr2:106066095-106079123 (-)
PWK/PhJ MGP_PWKPhJ_G0025149
 protein coding gene Chr2:102143566-102156656 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024949
 protein coding gene Chr2:105294667-105308932 (-)
WSB/EiJ MGP_WSBEiJ_G0025481
 protein coding gene Chr2:106806068-106819096 (-)



Homology
more
  • Human Ortholog
    RCN1, reticulocalbin 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RCN1, reticulocalbin 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HEL-S-84, PIG20, RCAL, RCN
  • Links
    NCBI Gene ID: 5954
    neXtProt AC: NX_Q15293
    UniProt: Q15293

  • Chr Location
    11p13; chr11:32090931-32105726 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    421
  • Tissues
    30
  • cDNA Data
    77
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000005973 Ensembl Gene Model | MGI Sequence Detail 13029 C57BL/6J ±  kb
    transcript ENSMUST00000006128 Ensembl | MGI Sequence Detail 2720 Not Applicable  
    polypeptide ENSMUSP00000006128 Ensembl | MGI Sequence Detail 325 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 81
      Genomic 3
      cDNA 77
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-25993
    References
    more
    • Summaries
      All 41
      Developmental Gene Expression 6
      Gene Ontology 5
      Phenotypes 9
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:265611 Jin J, et al., Neonatal Respiratory Failure with Retarded Perinatal Lung Maturation in Mice Caused by Reticulocalbin 3 Disruption. Am J Respir Cell Mol Biol. 2016 Mar;54(3):410-23
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    01/15/2019
    MGI 6.13     		The Jackson Laboratory