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Ccl9 Gene Detail
Summary
  • Symbol
    Ccl9
  • Name
    chemokine (C-C motif) ligand 9
  • Synonyms
    CCF18, MIP-1 gamma, MRP-2, Scya10, Scya9
  • Feature Type
    protein coding gene
  • IDs
    MGI:104533
    NCBI Gene: 20308
  • Alliance
  • Transcription Start Sites
    25 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:83572919-83578636 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 50.81 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104533
protein coding gene Chr11:83572917-83578636 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018853
protein coding gene Chr11:84914268-84919984 (-)
A/J MGP_AJ_G0018820
protein coding gene Chr11:81683405-81689121 (-)
AKR/J MGP_AKRJ_G0018790
protein coding gene Chr11:84121246-84126961 (-)
BALB/cJ MGP_BALBcJ_G0018793
protein coding gene Chr11:82100932-82106649 (-)
C3H/HeJ MGP_C3HHeJ_G0018607
protein coding gene Chr11:84176453-84182169 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019245
protein coding gene Chr11:87518258-87523975 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016879
protein coding gene Chr11:78804522-78810386 (-)
CAST/EiJ MGP_CASTEiJ_G0018162
protein coding gene Chr11:84750251-84755964 (-)
CBA/J MGP_CBAJ_G0018578
protein coding gene Chr11:91274469-91280185 (-)
DBA/2J MGP_DBA2J_G0018686
protein coding gene Chr11:81283203-81288919 (-)
FVB/NJ MGP_FVBNJ_G0018675
protein coding gene Chr11:80767008-80772725 (-)
LP/J MGP_LPJ_G0018756
protein coding gene Chr11:85465115-85470831 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018702
protein coding gene Chr11:91453499-91459216 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019285
protein coding gene Chr11:84390124-84395841 (-)
PWK/PhJ MGP_PWKPhJ_G0017931
protein coding gene Chr11:82041485-82047249 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017723
protein coding gene Chr11:83926285-83932046 (-)
WSB/EiJ MGP_WSBEiJ_G0018213
protein coding gene Chr11:84252430-84258168 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000019122 Ensembl Gene Model | MGI Sequence Detail 5718 C57BL/6J ±  kb
    transcript ENSMUST00000019266 Ensembl | MGI Sequence Detail 3006 Not Applicable  
    polypeptide ENSMUSP00000019266 Ensembl | MGI Sequence Detail 122 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 62
      Genomic 4
      cDNA 55
      Primer pair 3

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-25964, MGD-MRK-25965, MGI:104534
    References
    more
    • Summaries
      All 63
      Developmental Gene Expression 8
      Gene Ontology 5
      Phenotypes 18
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:240407 Li J, et al., Inflammatory Molecule, PSGL-1, Deficiency Activates Macrophages to Promote Colorectal Cancer Growth through NFkappaB Signaling. Mol Cancer Res. 2017 Apr;15(4):467-477

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory