Phxr2 Gene Detail

Summary

• Symbol
  Phxr2
• Name
  per-hexamer repeat gene 2
• Synonyms
  SP28

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:104524
  NCBI Gene: 18687
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:98961029-98962187 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 51.07 cM, cytoband C3
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_104524	protein coding gene	Chr10:98961029-98962187 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0017685	protein coding gene	Chr10:100932359-100933484 (-)
A/J	MGP_AJ_G0017664	protein coding gene	Chr10:97290359-97291517 (-)
AKR/J	MGP_AKRJ_G0017624	protein coding gene	Chr10:100077987-100079145 (-)
BALB/cJ	MGP_BALBcJ_G0017628	protein coding gene	Chr10:97563014-97564172 (-)
C3H/HeJ	MGP_C3HHeJ_G0017451	protein coding gene	Chr10:100094789-100095947 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0018084	protein coding gene	Chr10:104411000-104413264 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0017014	protein coding gene	Chr10:100160860-100161988 (-)
CBA/J	MGP_CBAJ_G0017420	protein coding gene	Chr10:108512280-108513438 (-)
DBA/2J	MGP_DBA2J_G0017526	protein coding gene	Chr10:96372545-96373950 (-)
FVB/NJ	MGP_FVBNJ_G0017519	protein coding gene	Chr10:95587263-95588665 (-)
LP/J	MGP_LPJ_G0017600	protein coding gene	Chr10:101510130-101511251 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017549	protein coding gene	Chr10:109782019-109783882 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018122	protein coding gene	Chr10:99981855-99983013 (-)
PWK/PhJ	MGP_PWKPhJ_G0016796	protein coding gene	Chr10:96503069-96504170 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0016585	protein coding gene	Chr10:98892365-98893568 (-)
WSB/EiJ	MGP_WSBEiJ_G0017074	protein coding gene	Chr10:99991143-99995262 (-)

Homology

• Gene Tree
  Phxr2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Phxr2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000055108 (Evidence)
• NCBI Gene
  18687

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055108	Ensembl Gene Model | MGI Sequence Detail	1159	C57BL/6J
transcript	ENSMUST00000060761	Ensembl | MGI Sequence Detail	1159	Not Applicable
polypeptide	P15972	UniProt | EBI | MGI Sequence Detail	65	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000034190 putative per-hexamer repeat protein 2
  (term hierarchy)

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGD-MRK-25955

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87