About   Help   FAQ
Efna1
Gene Detail
 Symbol
Name
ID
Efna1
ephrin A1
MGI:103236
Synonyms B61, EFL-1, Epl1, Eplg1, Lerk1, LERK-1
Feature Type protein coding gene
Genetic Map
Chromosome 3
39.04 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr3:89271733-89281142 bp, - strand
From VEGA annotation of GRCm38

  9410 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3262  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 2 zebrafish

Protein SuperFamily: Ephrin-A
Gene Tree: Efna1

Human
homologs
Human Homolog EFNA1, ephrin-A1
NCBI Gene ID 1942
neXtProt AC  NX_P20827
Human Synonyms  B61, ECKLG, EFL1, EPLG1, LERK1, LERK-1, TNFAIP4
Human Chr (Location)  1q21-q22; chr1:155127873-155134910 (+)  GRCh38
Alleles
and
phenotypes
All alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele exhibit decreased cardiac muscle contractility associated with increased mitral and aortic valve thickness and increased epithelial to mesenchyme transition in outflow tract endocardial cushions.
 
Gene Ontology
(GO)
classifications
All GO classifications: (31 annotations)
Process activation of MAPK activity, angiogenesis, ...
Component anchored component of membrane, anchored component of plasma membrane, ...
Function ephrin receptor binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (36 records)
Data Summary: Results (352)    Tissues (264)    Images (103)
Theiler Stages: 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 28
Assay TypeResults
Immunohistochemistry 7
RNA in situ 328
RT-PCR 17
cDNA source data(61)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress
Molecular
reagents
All nucleic(69) cDNA(63) Primer pair(4) Other(2)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000028819 (Evidence)
Ensembl Gene ModelENSMUSG00000027954 (Evidence)
Entrez Gene13636 (Evidence)
UniGene15675
DFCITC1578761, TC1628262, TC1635107
DoTSDT.492499, DT.94265082, DT.94265089
NIA Mouse Gene IndexU024274
Consensus CDS ProjectCCDS17501.1, CCDS50961.1
International Mouse Knockout Project StatusEfna1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028819 VEGA Gene Model | MGI Sequence Detail 9410 C57BL/6J ±  kb
transcript OTTMUST00000071370 VEGA | MGI Sequence Detail 1480 Not Applicable 
polypeptide OTTMUSP00000036557 VEGA | MGI Sequence Detail 205 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(4) UniProt(4)
Polymorphisms RFLP(3) : SNPs within 2kb(35 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008972 Cupredoxin
InterPro IPR001799 Ephrin
InterPro IPR019765 Ephrin, conserved site
Protein Ontology PR:000006916 ephrin-A1
References (Earliest) J:32147 Holzman LB, et al., A novel immediate-early response gene of endothelium is induced by cytokines and encodes a secreted protein. Mol Cell Biol. 1990 Nov;10(11):5830-8
(Latest) J:193107 Jin C, et al., Deciphering gene expression program of MAP3K1 in mouse eyelid morphogenesis. Dev Biol. 2013 Feb 1;374(1):96-107
All references(82)
Other
accession IDs
MGD-MRK-24110, MGI:2139679

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/15/2014
MGI 5.18
The Jackson Laboratory