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Tcf19 Gene Detail
Summary
  • Symbol
    Tcf19
  • Name
    transcription factor 19
  • Synonyms
    5730403J10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:103180
    NCBI Gene: 106795
  • Gene Overview
    MyGene.info: TCF19
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35512735-35516824 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.69 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_103180
protein coding gene Chr17:35512734-35516824 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023641
protein coding gene Chr17:35681179-35685273 (-)
A/J MGP_AJ_G0023596
protein coding gene Chr17:34583584-34587649 (-)
AKR/J MGP_AKRJ_G0023566
protein coding gene Chr17:34986120-34990184 (-)
BALB/cJ MGP_BALBcJ_G0023601
protein coding gene Chr17:34710448-34714513 (-)
C3H/HeJ MGP_C3HHeJ_G0023367
protein coding gene Chr17:35454440-35458504 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024043
protein coding gene Chr17:37146093-37150183 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021521
protein coding gene Chr17:32284669-32288703 (-)
CAST/EiJ MGP_CASTEiJ_G0022858
protein coding gene Chr17:35554985-35559052 (-)
CBA/J MGP_CBAJ_G0023345
protein coding gene Chr17:38690053-38694117 (-)
DBA/2J MGP_DBA2J_G0023469
protein coding gene Chr17:33898196-33902261 (-)
FVB/NJ MGP_FVBNJ_G0023440
protein coding gene Chr17:33688261-33692335 (-)
LP/J MGP_LPJ_G0023549
protein coding gene Chr17:36067458-36071552 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023461
protein coding gene Chr17:37497246-37502161 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024086
protein coding gene Chr17:35323750-35327842 (-)
PWK/PhJ MGP_PWKPhJ_G0022609
protein coding gene Chr17:32750270-32754362 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022428
protein coding gene Chr17:33360483-33364520 (-)
WSB/EiJ MGP_WSBEiJ_G0022924
protein coding gene Chr17:35454880-35458944 (-)



Homology
more
  • Human Ortholog
    TCF19, transcription factor 19
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TCF19, transcription factor 19
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SC1, TCF-19
  • Links
    NCBI Gene ID: 6941
    neXtProt AC: NX_Q9Y242
    UniProt: Q9Y242

  • Chr Location
    6p21.33; chr6:31158524-31164215 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 5156
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TCF19
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 106795 NCBI Gene Model | MGI Sequence Detail 4090 C57BL/6J ±  kb
    transcript NM_001163763 RefSeq | MGI Sequence Detail 1773 C57BL/6  
    polypeptide Q99KJ5 UniProt | EBI | MGI Sequence Detail 263 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR000253 Forkhead-associated (FHA) domain
      IPR008984 SMAD/FHA domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-24048, MGI:1913880, MGI:2147068
    References
    more
    • Summaries
      All 36
      Developmental Gene Expression 8
      Gene Ontology 1
      Phenotypes 9
    • Earliest
      J:51318 Ku DH, et al., A new growth-regulated complementary DNA with the sequence of a putative trans-activating factor. Cell Growth Differ. 1991 Apr;2(4):179-86
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory