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Pafah1b1-ps1 Pseudogene Detail
Summary
  • Symbol
    Pafah1b1-ps1
  • Name
    platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
  • Synonyms
    Lis3, Mdsh3, Pafaha-ps1
  • Feature Type
    pseudogene
  • IDs
    MGI:103115
    NCBI Gene: 18473
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr3:96407517-96409059 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 41.82 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_103115
pseudogene Chr3:96407377-96409464 (-)
129S1/SvImJ MGP_129S1SvImJ_G0012298
pseudogene Chr3:97263105-97266000 (-)
A/J MGP_AJ_G0012292
pseudogene Chr3:94186519-94188274 (-)
AKR/J MGP_AKRJ_G0012259
pseudogene Chr3:96388908-96390225 (-)
BALB/cJ MGP_BALBcJ_G0012275
pseudogene Chr3:93988007-93989397 (-)
C3H/HeJ MGP_C3HHeJ_G0012141
pseudogene Chr3:96666863-96669057 (-)
C57BL/6NJ MGP_C57BL6NJ_G0012587
pseudogene Chr3:100799253-100802350 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0010974
pseudogene Chr3:90454348-90455605 (-)
CAST/EiJ MGP_CASTEiJ_G0011913
pseudogene Chr3:95952432-95953740 (-)
CBA/J MGP_CBAJ_G0012119
pseudogene Chr3:104510579-104514133 (-)
DBA/2J MGP_DBA2J_G0012175
pseudogene Chr3:93482430-93483720 (-)
FVB/NJ MGP_FVBNJ_G0012177
pseudogene Chr3:91515987-91517291 (-)
LP/J MGP_LPJ_G0012245
pseudogene Chr3:98562276-98563582 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0012181
pseudogene Chr3:110584383-110591982 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0012592
pseudogene Chr3:96010096-96011549 (-)
PWK/PhJ MGP_PWKPhJ_G0011758
pseudogene Chr3:93333508-93335422 (-)
SPRET/EiJ MGP_SPRETEiJ_G0011573
pseudogene Chr3:94285998-94287146 (-)
WSB/EiJ MGP_WSBEiJ_G0011944
pseudogene Chr3:96426201-96427622 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Pafah1b1-ps1
  • Find Mice (IMSR)
Expression
less
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097041 Ensembl Gene Model | MGI Sequence Detail 1543 C57BL/6J ±  kb
transcript ENSMUST00000181263 Ensembl | MGI Sequence Detail 1046 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    Genomic 2
    cDNA 1
    Primer pair 1
    Other 1
Other
Accession IDs
less
MGD-MRK-23979
References
more
  • Summaries
    All 13
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 3
  • Earliest
    J:22395 Peterfy M, et al., Lissencephaly-1 is one of the most conserved proteins between mouse and human: a single amino-acid difference in 410 residues. Gene. 1994 Dec 15;150(2):415-6
  • Latest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory