About   Help   FAQ
Lcn3 Gene Detail
Summary
  • Symbol
    Lcn3
  • Name
    lipocalin 3
  • Synonyms
    Vnsp1
  • Feature Type
    protein coding gene
  • IDs
    MGI:102669
    NCBI Gene: 16820
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25765569-25768099 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 17.99 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_102669
protein coding gene Chr2:25765569-25768099 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025469
protein coding gene Chr2:23690434-23692964 (+)
A/J MGP_AJ_G0025446
protein coding gene Chr2:22780683-22783214 (+)
AKR/J MGP_AKRJ_G0025416
protein coding gene Chr2:23526391-23528922 (+)
BALB/cJ MGP_BALBcJ_G0025442
protein coding gene Chr2:22883776-22886306 (+)
C3H/HeJ MGP_C3HHeJ_G0025203
protein coding gene Chr2:23453234-23455764 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025886
protein coding gene Chr2:24447063-24449593 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023297
protein coding gene Chr2:21665869-21668415 (+)
CAST/EiJ MGP_CASTEiJ_G0024666
protein coding gene Chr2:23338826-23341361 (+)
CBA/J MGP_CBAJ_G0025181
protein coding gene Chr2:25287801-25290331 (+)
DBA/2J MGP_DBA2J_G0025314
protein coding gene Chr2:22605058-22607589 (+)
FVB/NJ MGP_FVBNJ_G0025276
protein coding gene Chr2:22349065-22351595 (+)
LP/J MGP_LPJ_G0025400
protein coding gene Chr2:23622721-23625251 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025307
protein coding gene Chr2:25460400-25462930 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025945
protein coding gene Chr2:23482076-23484606 (+)
PWK/PhJ MGP_PWKPhJ_G0024414
protein coding gene Chr2:22400439-22402972 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024214
protein coding gene Chr2:23600543-23603074 (+)
WSB/EiJ MGP_WSBEiJ_G0024735
protein coding gene Chr2:23547853-23550383 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 16820 NCBI Gene Model | MGI Sequence Detail 2531 C57BL/6J ±  kb
transcript NM_010694 RefSeq | MGI Sequence Detail 719 C57BL/6  
polypeptide Q62471 UniProt | EBI | MGI Sequence Detail 182 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-19570
References
more
  • Summaries
    All 22
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:23599 Miyawaki A, et al., Possible pheromone-carrier function of two lipocalin proteins in the vomeronasal organ. EMBO J. 1994 Dec 15;13(24):5835-42
  • Latest
    J:274568 Choi JH, et al., LMBR1L regulates lymphopoiesis through Wnt/beta-catenin signaling. Science. 2019 May 10;364(6440)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/11/2019
MGI 6.14
The Jackson Laboratory