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Slc12a2 Gene Detail
Summary
  • Symbol
    Slc12a2
  • Name
    solute carrier family 12, member 2
  • Synonyms
    mBSC2, Nkcc1, sodium/potassium/chloride cotransporters, sy-ns
  • Feature Type
    protein coding gene
  • IDs
    MGI:101924
    NCBI Gene: 20496
Location & Maps
more
  • Sequence Map
    Chr18:57878678-57946821 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      68144 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    SLC12A2, solute carrier family 12 member 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC12A2, solute carrier family 12 member 2
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BSC, BSC2, NKCC1, PPP1R141
  • Links
    NCBI Gene ID: 6558
    neXtProt AC: NX_P55011

  • Chr Location
    5q23.3; chr5:128083791-128189688 (+)  GRCh38.p2

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    71 phenotypes from 7 alleles in 10 genetic backgrounds
    4 phenotypes from multigenic genotypes
    6 images
    50 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryogenesis
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
tumorigenesis
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    12
  • Gene trapped
    2
  • Radiation induced
    1
  • Spontaneous
    2
  • Targeted
    7
  • Genomic Mutations
    1 involving Slc12a2
  • Incidental Mutations
Homozygous mutants show variably severe deafness, head-shaking, circling, reduced endolymph secretion, male sterility, growth retardation, hypotension, reduced salivation, delayed ductal outgrowth of mammary epithelium and increased periweaning mortality.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024597 Ensembl Gene Model | MGI Sequence Detail 68144 C57BL/6J ±  kb
transcript ENSMUST00000115366 Ensembl | MGI Sequence Detail 6520 Not Applicable  
polypeptide ENSMUSP00000111023 Ensembl | MGI Sequence Detail 1206 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    450 from dbSNP Build 142
  • PCR
Protein
Information
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Molecular
Reagents
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  • All nucleic 226
    Genomic 1
    cDNA 220
    Primer pair 4
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGD-MRK-18753
References
more
  • Summaries
    All 104
    Developmental Gene Expression 17
    Diseases 1
    Gene Ontology 12
    Phenotypes 50
  • Earliest
    J:21042 Delpire E, et al., Molecular cloning and chromosome localization of a putative basolateral Na(+)-K(+)-2Cl- cotransporter from mouse inner medullary collecting duct (mIMCD-3) cells. J Biol Chem. 1994 Oct 14;269(41):25677-83
  • Latest
    J:228180 Deidda G, et al., Reversing excitatory GABAAR signaling restores synaptic plasticity and memory in a mouse model of Down syndrome. Nat Med. 2015 Apr;21(4):318-26

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory