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Mouse SNP Query Form
Search for SNPs by strain, strain comparisons, SNP attributes, map position, marker range, or associated genes.
(From dbSNP Build 137)
    (output options can be specified below)
strain comparisons
Choose strains and strain order, and which SNPs to return by comparison. If a reference strain is selected, comparison is to the reference strain allele.
Available Strains:   Selected Strain(s):  

Sort Strains


Reference Strain: (optional)

SNPs Returned:
(relative to the Reference Strain Allele)


SNP attributes Find SNPs by variation type and function class.

Variation Type:
dbSNP Function Class:

Map position Find SNPs within a genome region or between selected markers.

Genome coordinates: (from GRCm38)

Marker range: (Enter Exact Marker/Gene symbols)
Between: and:
(includes SNPs within specified markers)
Associated genes Find SNPs within or near genes.
Gene Symbol/Name: Search

SNPs Located Near Genes: Include SNPs located: specified genes,  
Choose the maximum results to return and output formats.

Show in results:
Allele Display Mode Show labels: 'S' or 'D' (Same/Different as Reference Strain allele)
Strain Restriction Include SNPs with alleles for any Selected Strains or the Reference Strain
Multiple Locations Include SNPs that map to multiple locations
Columns to Show
SNP ID Map Position rs orientation Gene: Function Class
# of Assays (ss) Variation Type Strain Alleles Allele Summary
Output format:

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Send questions and comments to User Support.
last database update
MGI 6.02
The Jackson Laboratory