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Agtpbp1 Gene Detail
 Symbol
Name
ID
Agtpbp1
ATP/GTP binding protein 1
MGI:2159437


Nomenclature History
Synonyms 1700020N17Rik, 2310001G17Rik, 2900054O13Rik, 4930445M19Rik, 5730402G09Rik, nmf243, Nna1
Genetic Map
Chromosome 13
37.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 8)

Sequence Map
Chr13:59550896-59658680 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Agtpbp1 ± 2 cM)
TreeFam: TF313794
Sequences
Representative Sequences Length Strain/Species Flank
genomic 67269 NCBI Gene Model | MGI Sequence Detail 107785 C57BL/6J ± Kb
transcript NM_023328 RefSeq | MGI Sequence Detail 4389 C57BL/6
polypeptide Q641K1 UniProt | EBI | MGI Sequence Detail 1218 Not Applicable
For the selected sequences
All sequences(65)
Alleles
and
phenotypes
All alleles(17) : Gene trapped(6) Transgenic(1) Spontaneous(6) Chemically induced(4)
Homozygotes show moderate ataxia due to degeneration of Purkinje cells of the cerebellum. Also, there is gradual degeneration of retina photoreceptor cells, olfactory bulb mitral cells and some thalamic neurons. Males have abnormal sperm and are sterile.
Phenotype Images (3)  
Polymorphisms RFLP(1) SNPs within 2kb(709 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(14)
Process cerebellar Purkinje cell differentiation, neuromuscular process...
Component cytoplasm, nucleus...
Function carboxypeptidase activity, hydrolase activity...
External Resources: MouseFunc
Expression Literature Summary: (1 records)
Data Summary: Assays (2)    Results (17)    Tissues (11)
Theiler Stages: 22,25,28
  Assay Type Assays   Results
      RT-PCR 1   12
      RNA in situ 1   5
cDNA source data(15)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(21) Genomic(1) cDNA(17) Primer pair(3)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000021557
DoTS DT.101323270, DT.101353189, DT.101384842, DT.101703215, DT.101736879, DT.110974931, DT.527005, DT.55232398, DT.91429199, DT.91588723, DT.94158776, DT.94266764, DT.94273792, DT.97414227, DT.99848187
DFCI TC1578973, TC1586050, TC1593599, TC1603506, TC1606364, TC1610931, TC1636438, TC1636588, TC1670366, TC1701767, TC1714363, TC1750777
NIA Mouse Gene Index U034857, U034858
Entrez Gene 67269
International Mouse Knockout Project Status Agtpbp1
Protein
domains
InterPro ID Description
IPR000834 Peptidase M14, carboxypeptidase A
Graphical View of Protein Domain Structure
References
(Earliest) J:5597 Mullen RJ et al., "Two types of retinal degeneration in cerebellar mutant mice." Nature 1975 Dec 11;258(5535):528-30
(Latest) J:146470 Matsuda K et al., "Cbln1 binds to specific postsynaptic sites at parallel fiber-Purkinje cell synapses in the cerebellum." Eur J Neurosci 2009 Feb;29(4):707-17
All references(107)
Other
accession IDs
MGD-MRK-13173, MGI:1914519, MGI:1916623, MGI:1921986, MGI:1922111, MGI:1923828, MGI:2145471, MGI:97500

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory