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B3gnt5 Gene Detail
 Symbol
Name
ID
B3gnt5
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
MGI:2137302


Nomenclature History
Genetic Map
Chromosome 16
cytoband B1
 
Mapping data( 3)
Sequence Map
Chr16:19760301-19772556 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
TreeFam: TF318639
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000026282 VEGA Gene Model | MGI Sequence Detail 12256 C57BL/6J ± Kb
transcript NM_001159407 RefSeq | MGI Sequence Detail 4872 C57BL/6
polypeptide Q8BGY6 UniProt | EBI | MGI Sequence Detail 376 Not Applicable
For the selected sequences
All sequences(30)
Alleles
and
phenotypes
All alleles(5) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(2)
Mice homozygous for a knock-out allele die prior to implantation.
Polymorphisms SNPs within 2kb(130 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process multicellular organismal development, protein amino acid glycosylation...
Component Golgi apparatus, integral to membrane...
Function galactosyltransferase activity, lipopolysaccharide N-acetylglucosaminyltransferase activity...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (3)    Results (36)    Tissues (33)    Images (11)
Theiler Stages: 2,5,10,18,22,23,25,28
  Assay Type Assays   Results
      RNA in situ 2   22
      Northern blot 1   14
cDNA source data(70)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(70) cDNA(70)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000022686
DoTS DT.101382186, DT.103557833, DT.485221, DT.94122922, DT.97397284
Consensus CDS Project CCDS28040.1
UniGene 33935
DFCI TC1578293, TC1611287, TC1665156
NIA Mouse Gene Index U043503
Entrez Gene 108105
VEGA Gene Model OTTMUSG00000026282
International Mouse Knockout Project Status B3gnt5
Protein
domains
InterPro ID Description
IPR002659 Glycosyl transferase, family 31
Graphical View of Protein Domain Structure
References
(Earliest) J:70124 Togayachi A et al., "Molecular cloning and characterization of UDP-GlcNAc:lactosylceramide beta 1,3-N-acetylglucosaminyltransferase (beta 3Gn-T5), an essential enzyme for the expression of HNK-1 and Lewis X epitopes on glycolipids." J Biol Chem 2001 Jun 22;276(25):22032-40
(Latest) J:144040 Biellmann F et al., "The Lc3-synthase gene B3gnt5 is essential to pre-implantation development of the murine embryo." BMC Dev Biol 2008;8():109
All references(6)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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