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B4galt6 Gene Detail
 Symbol
Name
ID
B4galt6
UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
MGI:1928380


Nomenclature History
Genetic Map
Chromosome 18
Syntenic
 
Mapping data( 1)
Sequence Map
Chr18:20844504-20904905 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: beta-1,4-galactosyltransferase, B4GalT1-6 types
TreeFam: TF312834
Sequences
Representative Sequences Length Strain/Species Flank
genomic 56386 NCBI Gene Model | MGI Sequence Detail 60402 C57BL/6J ± Kb
transcript NM_019737 RefSeq | MGI Sequence Detail 5808 C57BL/6
polypeptide Q9WVK5 UniProt | EBI | MGI Sequence Detail 382 Not Applicable
For the selected sequences
All sequences(36)
Alleles
and
phenotypes
All alleles(65) : Gene trapped(65)
Mice homozygous for disruptions in this gene display a normal phenotype.
Polymorphisms SNPs within 2kb(277 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process carbohydrate metabolic process, sphingolipid biosynthetic process...
Component Golgi apparatus, integral to membrane...
Function calcium ion binding, galactosyltransferase activity...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (1)    Results (7)    Tissues (5)
Theiler Stages: 20,22,24,26,28
  Assay Type Assays   Results
      RT-PCR 1   7
cDNA source data(14)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000056124
DoTS DT.487103, DT.528524, DT.94131587
Consensus CDS Project CCDS29086.1
DFCI TC1578762, TC1612873, TC1645617
NIA Mouse Gene Index U061328
Entrez Gene 56386
International Mouse Knockout Project Status B4galt6
Protein
domains
InterPro ID Description
IPR003859 Metazoa galactosyltransferase
Graphical View of Protein Domain Structure
References
(Earliest) J:47946 Nomura T et al., "Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain." J Biol Chem 1998 May 29;273(22):13570-7
(Latest) J:128836 Ngamukote S et al., "Developmental changes of glycosphingolipids and expression of glycogenes in mouse brains." J Neurochem 2007 Dec;103(6):2327-41
All references(11)
Other
accession IDs
MGI:2147179, MGI:2147314

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory